Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h20r
         (355 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2561| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   1.9  
SB_22837| Best HMM Match : REJ (HMM E-Value=0.057)                     28   2.5  
SB_53942| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-08)                 27   3.3  
SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.3  
SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_49363| Best HMM Match : Laminin_G_2 (HMM E-Value=0.0048)            27   4.4  
SB_6552| Best HMM Match : Glyco_transf_9 (HMM E-Value=1.9)             27   5.8  
SB_57583| Best HMM Match : DUF572 (HMM E-Value=2.1)                    26   7.7  
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.7  
SB_1029| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   7.7  

>SB_2561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 649

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 286 IYRLRLW*LFGYCFRYRYSRCRNFSLFG*LRT 191
           +YRL+ W +   C  Y Y   R  S+ G L+T
Sbjct: 144 MYRLKAWNIMESCLSYIYPHTRLHSIIGILKT 175


>SB_22837| Best HMM Match : REJ (HMM E-Value=0.057)
          Length = 643

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 23/77 (29%), Positives = 31/77 (40%)
 Frame = -2

Query: 300 SNVEASTGYDFGDFLATVLGIGIAVVGILACLGNYARQRARNEFI*VHQNLPSCFSTRKS 121
           SN + S  Y        V+ IG  + GI  C+G   R RAR     V    P+  ST  S
Sbjct: 538 SNCDWSILYVTVIIFGIVMAIGGIIWGICFCMGRSRRLRARKV---VAVEAPTIPSTSAS 594

Query: 120 RINEYGKKYLIPSHIPV 70
               Y   +   + +PV
Sbjct: 595 ESPGYDHSFFARASLPV 611


>SB_53942| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-08)
          Length = 435

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 144 SCFSTRKSRINEYGKKYLIPSHIPVIYPRNFQAI*NKLKVL 22
           SC  +  S  N Y  ++L+P+H P  Y    Q    K++ L
Sbjct: 108 SCTGSVSSEANLYDPRFLVPTHPPKAYGAEKQEATKKMENL 148


>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 159  HQNLPSCFSTRKSRINEYGKKYLIPSHIPV 70
            H N+PSC S   + +N Y    + P+  P+
Sbjct: 936  HNNVPSCQSATATPLNSYHSSLVNPTTTPI 965


>SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1892

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 100 FSIFIYSRLACAETRWQVLMNLYKLVSRPLPCVI--TQTG*NSYNGYTDT*N 249
           + +F+ SRLA    RW  L+    ++   +  V+  T+T  NS N + D  N
Sbjct: 61  YILFVLSRLAMIRLRWANLVISLMIIMPIIYLVVKETETDENSINNFEDDLN 112


>SB_49363| Best HMM Match : Laminin_G_2 (HMM E-Value=0.0048)
          Length = 355

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 316 HNSWYKQCGSIYRLRLW 266
           H  WY  CG I  LR+W
Sbjct: 261 HCGWYPFCGQIRELRVW 277


>SB_6552| Best HMM Match : Glyco_transf_9 (HMM E-Value=1.9)
          Length = 930

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 144 SCFSTRKSRINEYGKKYLIPSHIPVIY 64
           SC  +  S  N Y  ++L+P+H P  Y
Sbjct: 891 SCTGSVSSEANLYDPRFLVPTHPPKAY 917


>SB_57583| Best HMM Match : DUF572 (HMM E-Value=2.1)
          Length = 638

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = +1

Query: 118 SRLACAETRWQVLMNLYKLVSRPLPCVITQTG*NSYNGYTDT*NSSQKVTKVVTCRC 288
           SRL  A TR+  +  LY + ++P P  I QT  +SY            V  VV   C
Sbjct: 467 SRLEHARTRFSTIQELYVIKTQPSPPDI-QTRDSSYTSGVCCYGEDHDVIGVVVVLC 522


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 256 GYCFRYRYSRCRNFSL 209
           GYC +Y  SRC N+ L
Sbjct: 403 GYCGKYCQSRCNNYKL 418


>SB_1029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -2

Query: 351 FKMY--FQLCFLLFTILGISNVEASTGYDFGDFLATVLGIGIAVVGILACLGNYAR 190
           FKM+   Q+  L+F I G +    S  +D   F    LG+ I ++GIL  L    R
Sbjct: 390 FKMHRGLQVSGLVFAIGGFACAVVSVPFDHLMFAHGGLGLAIMIMGILQPLNAIIR 445


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,424,755
Number of Sequences: 59808
Number of extensions: 230722
Number of successful extensions: 473
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)