Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h20r
         (355 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical pr...    27   2.8  
U55774-2|AAA98009.3|  380|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z70036-1|CAA93875.1|  522|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U58757-12|AAK66021.1|   60|Caenorhabditis elegans Histone h1 lik...    27   5.0  
U58757-11|AAC47916.1|   62|Caenorhabditis elegans Histone h1 lik...    27   5.0  
U58757-10|AAK66020.1|   66|Caenorhabditis elegans Histone h1 lik...    27   5.0  
AF216291-1|AAF23175.1|   60|Caenorhabditis elegans histone H1.Q ...    27   5.0  
U53338-4|AAA96192.3|  235|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AF317421-1|AAK69599.1|  235|Caenorhabditis elegans lysosomal-ass...    26   8.7  

>Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical
           protein C05G5.2 protein.
          Length = 685

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 215 KIPTTAIPIPKTVAKKSPKS*PVDASTLLIPRI 313
           K P   + +PK V   +PK  PV  +T +IP++
Sbjct: 511 KKPIEPVVVPKAVDIPAPKPTPVTNTTAVIPKV 543


>U55774-2|AAA98009.3|  380|Caenorhabditis elegans Hypothetical
           protein F35G8.1 protein.
          Length = 380

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 273 DFGDFLATVLGIGIAVVGILACLGNYA 193
           D G  + T+L +G  +VG L+ +GN A
Sbjct: 18  DIGIHMKTLLAVGYGLVGALSLVGNLA 44


>Z70036-1|CAA93875.1|  522|Caenorhabditis elegans Hypothetical
           protein T01B4.1 protein.
          Length = 522

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
 Frame = +1

Query: 73  RYMGWNEIFFSIFI-----YSRLACAETRWQVLMNLYKLVSRPL 189
           R+  WN +FFS  I     Y  LAC     ++   +Y ++  PL
Sbjct: 124 RWDFWNSVFFSATIFTTIGYGNLACKTNLGRIATIIYGMIGIPL 167


>U58757-12|AAK66021.1|   60|Caenorhabditis elegans Histone h1 like
           protein 7, isoformc protein.
          Length = 60

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 203 PKQAKIPTTAIPIPKTVAKKSP 268
           PK+A  P    P+ K  AKKSP
Sbjct: 30  PKKAAAPKAKKPVKKAAAKKSP 51


>U58757-11|AAC47916.1|   62|Caenorhabditis elegans Histone h1 like
           protein 7, isoforma protein.
          Length = 62

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 203 PKQAKIPTTAIPIPKTVAKKSP 268
           PK+A  P    P+ K  AKKSP
Sbjct: 32  PKKAAAPKAKKPVKKAAAKKSP 53


>U58757-10|AAK66020.1|   66|Caenorhabditis elegans Histone h1 like
           protein 7, isoformb protein.
          Length = 66

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 203 PKQAKIPTTAIPIPKTVAKKSP 268
           PK+A  P    P+ K  AKKSP
Sbjct: 36  PKKAAAPKAKKPVKKAAAKKSP 57


>AF216291-1|AAF23175.1|   60|Caenorhabditis elegans histone H1.Q
           protein.
          Length = 60

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 203 PKQAKIPTTAIPIPKTVAKKSP 268
           PK+A  P    P+ K  AKKSP
Sbjct: 30  PKKAAAPKAKKPVKKAAAKKSP 51


>U53338-4|AAA96192.3|  235|Caenorhabditis elegans Hypothetical
           protein C05E11.3 protein.
          Length = 235

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 276 YDFGDFLATVLGIGIAVVGILACLGNYARQRA 181
           Y FG FLA ++G+G+ +  +       +R  A
Sbjct: 90  YVFGSFLAEMIGLGLGIFAVFLLFVALSRNSA 121


>U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical
           protein F53B3.2 protein.
          Length = 634

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 224 TTAIPIPKTVAKKSPKS*PVD 286
           TT+ P+PKT  +  PK  PVD
Sbjct: 93  TTSTPLPKTPKRFRPKIIPVD 113


>AF317421-1|AAK69599.1|  235|Caenorhabditis elegans
           lysosomal-associated transmembraneprotein protein.
          Length = 235

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 276 YDFGDFLATVLGIGIAVVGILACLGNYARQRA 181
           Y FG FLA ++G+G+ +  +       +R  A
Sbjct: 90  YVFGSFLAEMIGLGLGIFAVFLLFVALSRNSA 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,637,581
Number of Sequences: 27780
Number of extensions: 174296
Number of successful extensions: 532
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)