Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h20f
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    28   0.64 
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    27   0.85 
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   3.4  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    25   3.4  
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    24   7.9  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    24   7.9  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    24   7.9  

>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 27.9 bits (59), Expect = 0.64
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 319 ILYSLEVSWIDDRYMGWNEI 260
           +LY++E SWI  +Y+G N I
Sbjct: 105 VLYNVEQSWIGYKYLGGNRI 124


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 27.5 bits (58), Expect = 0.85
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +2

Query: 32  LLFTILGISNVEASTGY--DFGDFLATVLGIGIAVVGILACLGNY 160
           L F ++  S     TG+  +FG  LA  L +G    G+  CL  Y
Sbjct: 127 LAFIVISYSLTTIFTGFCHNFGGLLAARLVLGFCEAGLFPCLALY 171


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 8   KMYFQLCFLLFTILGISNVEASTGYDFGDFL 100
           ++  +L FL FT+   SN E     D+ DF+
Sbjct: 6   QILLRLLFLAFTLKSTSNAEKHDKVDYKDFV 36


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -1

Query: 313 YSLEVSWIDDRYMGWNEIFFSIFIYSRLAC--AETRWQVLMNLYKLVSRP 170
           Y  ++ W+D    G     F++ I+ RLA   ++ R++ ++ +Y  ++ P
Sbjct: 290 YLNQMEWLDGTVKGEENSQFTLKIHERLASFFSQKRYRNVVTIYGALNEP 339


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 71  STGYDFGDFLATVLGIGIAVVGIL 142
           S GY  G FL+ +L + IAV  ++
Sbjct: 260 SLGYQVGSFLSHLLSLTIAVTALV 283


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 227 RKSRINEYGKKYLIPSHIPVIYPRNFQAI 313
           R  ++ E GKK  +   +P + P N Q I
Sbjct: 602 RVQKVIESGKKIALKKDVPRLIPSNIQPI 630


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -1

Query: 310 SLEVSWIDDRYMGWNEIFFSIFIYSRLACAETRWQVLMNLYKLVS 176
           ++E+S   ++Y+  N I    ++Y R  CA+     L  +Y L +
Sbjct: 672 AMEISARGNQYLQDNRIDNKCYLYERQKCADAIGYALNLIYLLAA 716


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,772,069
Number of Sequences: 5004
Number of extensions: 37285
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)