Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h20f
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0053 + 10673264-10674510,10674552-10674576,10674802-106748...    27   4.3  
03_02_0534 - 9267297-9267734,9268376-9268649,9268782-9268889,926...    27   7.6  
01_05_0657 + 24034198-24036306                                         27   7.6  

>01_02_0053 +
           10673264-10674510,10674552-10674576,10674802-10674886,
           10675074-10675084
          Length = 455

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 132 TTAIPIPKTVAKKSPKS*PVDASTLLIPR 46
           T A+P+PK  A K     P D  T L+PR
Sbjct: 142 TRALPVPKIAAAKRDFGLPDDFLTSLVPR 170


>03_02_0534 -
           9267297-9267734,9268376-9268649,9268782-9268889,
           9269476-9269567,9269652-9269711,9269812-9269994
          Length = 384

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 10/42 (23%), Positives = 25/42 (59%)
 Frame = +3

Query: 180 TSLYRFIKTCHLVSAHASLE*MNMEKNISFHPIYLSSIQETS 305
           T+L+  +   H+ +AH  L+ ++M  ++  HP  ++  ++T+
Sbjct: 42  TTLFDRLSALHIAAAHGHLQVVSMALDLCVHPDVVNRHKQTA 83


>01_05_0657 + 24034198-24036306
          Length = 702

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 116 IGIAVVGILACLGNYARQRARN 181
           +G+A + +L  LG+Y RQ +RN
Sbjct: 13  LGVAALFVLLILGSYRRQSSRN 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,169,759
Number of Sequences: 37544
Number of extensions: 196808
Number of successful extensions: 391
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)