Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h20f
         (409 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2561| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.6  
SB_22837| Best HMM Match : REJ (HMM E-Value=0.057)                     28   3.4  
SB_53942| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-08)                 27   4.5  
SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_49363| Best HMM Match : Laminin_G_2 (HMM E-Value=0.0048)            27   5.9  
SB_6552| Best HMM Match : Glyco_transf_9 (HMM E-Value=1.9)             27   7.8  

>SB_2561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 649

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 70  IYRLRLW*LFGYCFRYRYSRCRNFSLFG*LRT 165
           +YRL+ W +   C  Y Y   R  S+ G L+T
Sbjct: 144 MYRLKAWNIMESCLSYIYPHTRLHSIIGILKT 175


>SB_22837| Best HMM Match : REJ (HMM E-Value=0.057)
          Length = 643

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 23/77 (29%), Positives = 31/77 (40%)
 Frame = +2

Query: 56  SNVEASTGYDFGDFLATVLGIGIAVVGILACLGNYARQRARNEFI*VHQNLPSCFSTRKS 235
           SN + S  Y        V+ IG  + GI  C+G   R RAR     V    P+  ST  S
Sbjct: 538 SNCDWSILYVTVIIFGIVMAIGGIIWGICFCMGRSRRLRARKV---VAVEAPTIPSTSAS 594

Query: 236 RINEYGKKYLIPSHIPV 286
               Y   +   + +PV
Sbjct: 595 ESPGYDHSFFARASLPV 611


>SB_53942| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-08)
          Length = 435

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 212 SCFSTRKSRINEYGKKYLIPSHIPVIYPRNFQAI*NKLKVL 334
           SC  +  S  N Y  ++L+P+H P  Y    Q    K++ L
Sbjct: 108 SCTGSVSSEANLYDPRFLVPTHPPKAYGAEKQEATKKMENL 148


>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 197  HQNLPSCFSTRKSRINEYGKKYLIPSHIPV 286
            H N+PSC S   + +N Y    + P+  P+
Sbjct: 936  HNNVPSCQSATATPLNSYHSSLVNPTTTPI 965


>SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1892

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -1

Query: 256 FSIFIYSRLACAETRWQVLMNLYKLVSRPLPCVI--TQTG*NSYNGYTDT*N 107
           + +F+ SRLA    RW  L+    ++   +  V+  T+T  NS N + D  N
Sbjct: 61  YILFVLSRLAMIRLRWANLVISLMIIMPIIYLVVKETETDENSINNFEDDLN 112


>SB_49363| Best HMM Match : Laminin_G_2 (HMM E-Value=0.0048)
          Length = 355

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 40  HNSWYKQCGSIYRLRLW 90
           H  WY  CG I  LR+W
Sbjct: 261 HCGWYPFCGQIRELRVW 277


>SB_6552| Best HMM Match : Glyco_transf_9 (HMM E-Value=1.9)
          Length = 930

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 212 SCFSTRKSRINEYGKKYLIPSHIPVIY 292
           SC  +  S  N Y  ++L+P+H P  Y
Sbjct: 891 SCTGSVSSEANLYDPRFLVPTHPPKAY 917


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,368,004
Number of Sequences: 59808
Number of extensions: 252424
Number of successful extensions: 485
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)