Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h20f
         (409 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P...    26   8.5  
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P...    26   8.5  

>At5g16070.1 68418.m01878 chaperonin, putative similar to
           SWISS-PROT:P80317 T-complex protein 1, zeta subunit
           (TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 535

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 153 VITHGKGRETSLYRFIKTCHLVSAHASLE*MNMEKNISF 269
           V+ HG  R   + R  + CH+++ + SLE    E N  F
Sbjct: 214 VLDHGS-RHPDMKRRAENCHILTCNVSLEYEKSEINAGF 251


>At3g02530.1 68416.m00241 chaperonin, putative similar to
           SWISS-PROT:P80317- T-complex protein 1, zeta subunit
           (TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 535

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 153 VITHGKGRETSLYRFIKTCHLVSAHASLE*MNMEKNISF 269
           V+ HG  R   + R  + CH+++ + SLE    E N  F
Sbjct: 214 VLDHGS-RHPDMKRRAENCHILTCNVSLEYEKSEINAGF 251


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,772,558
Number of Sequences: 28952
Number of extensions: 177601
Number of successful extensions: 345
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)