Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h19r
         (437 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0)             175   1e-44
SB_56358| Best HMM Match : Fork_head (HMM E-Value=1.2e-30)             31   0.55 
SB_57283| Best HMM Match : HEAT (HMM E-Value=6.3)                      30   0.96 
SB_48554| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_36666| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_39090| Best HMM Match : zf-piccolo (HMM E-Value=0.81)               28   3.9  
SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   3.9  
SB_57833| Best HMM Match : RnaseH (HMM E-Value=0.18)                   28   3.9  
SB_56455| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)                   28   3.9  
SB_29343| Best HMM Match : PPI_Ypi1 (HMM E-Value=0.91)                 28   3.9  
SB_24332| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_4267| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.1  
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)             27   5.1  
SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003)                  27   5.1  
SB_16188| Best HMM Match : KOW (HMM E-Value=5.7e-16)                   27   5.1  
SB_11435| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_31114| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_2474| Best HMM Match : Methyltransf_3 (HMM E-Value=9.9)             27   8.9  
SB_50619| Best HMM Match : RnaseH (HMM E-Value=0.89)                   27   8.9  
SB_28712| Best HMM Match : K_tetra (HMM E-Value=1e-17)                 27   8.9  

>SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0)
          Length = 168

 Score =  175 bits (426), Expect = 1e-44
 Identities = 83/128 (64%), Positives = 100/128 (78%), Gaps = 2/128 (1%)
 Frame = -1

Query: 398 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 219
           MGK +K GKVVLVL GRYAG+KA+++KNYD+G+SDKPYGHA VAG+ RYP KV KRMGK 
Sbjct: 1   MGKFIKSGKVVLVLRGRYAGKKALIIKNYDDGSSDKPYGHALVAGVARYPLKVTKRMGKK 60

Query: 218 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK-FSAKDL-KDPAKRKKLRFNTRVRFEE 45
           +  KRSK+KPFVKV NYNHLMPTRY+VD   +K    KD+ +DPA +KK     +   EE
Sbjct: 61  RTAKRSKVKPFVKVFNYNHLMPTRYSVDVPLDKQVVNKDVFRDPALKKKALREVKSTLEE 120

Query: 44  RYKSGKNQ 21
           RYKSGKN+
Sbjct: 121 RYKSGKNK 128


>SB_56358| Best HMM Match : Fork_head (HMM E-Value=1.2e-30)
          Length = 289

 Score = 30.7 bits (66), Expect = 0.55
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = -3

Query: 321 QELRRRYLRQAVRACFRRWYRQVPPESAQEDGKE*NPQEVQDKAFREGCKL*SLDANTLY 142
           +E  R+ L  A R  FR  Y +  PE     GK   P+ +    +R GCK  +   N LY
Sbjct: 171 RETSRKELEYASR--FRPAYARYAPELGCRTGKNQEPKRITRVQWRFGCKFPNPVTNELY 228

Query: 141 S 139
           +
Sbjct: 229 A 229


>SB_57283| Best HMM Match : HEAT (HMM E-Value=6.3)
          Length = 378

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +3

Query: 9   WKNHLVLPTFVPLFKTYSRVETQLLTFCRVFQVFCAEFFKAEVNCITCWH-QVIIVYNLH 185
           +  H  LP  + LF  YS     L +   V + F   FF     C+     + I++YN H
Sbjct: 279 YNRHETLPQSLFLFSVYSTWTYGLFSCTTVMRHFPNRFFSLVCTCVQYVDIRFILLYNRH 338

Query: 186 ERL 194
           E L
Sbjct: 339 ETL 341


>SB_48554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 176 QPSRKALSWTSCGFYSFPSSCALSGGTCRY-QRRKHARTAC 295
           QP + A S    GFYS+ + C      C Y ++  H ++ C
Sbjct: 97  QPVKPARSNNCGGFYSYTTECPAKEKICNYCKKPNHFKSVC 137


>SB_36666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 161 SDYSLQPSRKALSWTSCG 214
           S Y ++P  K+L W SCG
Sbjct: 2   SSYRIKPKNKSLGWVSCG 19


>SB_39090| Best HMM Match : zf-piccolo (HMM E-Value=0.81)
          Length = 245

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +1

Query: 52  KRTRVLKRSFLRFAGSFRSFALNFSKL 132
           K T+ L+ +FL FA  +RSF  NFSK+
Sbjct: 100 KNTKELQ-TFLGFASYYRSFVKNFSKV 125


>SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2028

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +1

Query: 52  KRTRVLKRSFLRFAGSFRSFALNFSKL 132
           K T+ L+ +FL FA  +RSF  NFSK+
Sbjct: 598 KNTKELQ-TFLGFASYYRSFVKNFSKV 623


>SB_57833| Best HMM Match : RnaseH (HMM E-Value=0.18)
          Length = 366

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +1

Query: 52  KRTRVLKRSFLRFAGSFRSFALNFSKL 132
           K T+ L+ +FL FA  +RSF  NFSK+
Sbjct: 61  KNTKELQ-TFLGFASYYRSFVKNFSKV 86


>SB_56455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -1

Query: 311 DEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYN 165
           D+   D  Y   + AG+ +  +  HK+ G  K   +   KP +K VN N
Sbjct: 198 DDDIDDDEYHPGYSAGLKKRLKAAHKQRGYTKAFAKRGTKP-MKEVNSN 245


>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
          Length = 2200

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = -1

Query: 263  IDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMP-TRYTVDFSFEKFSAKDLKDPAK 87
            I  Y  KVH    K + + ++K+ PF K    N ++P  +  V  +FEK++A    + +K
Sbjct: 1083 IKMYMEKVHYYKAKVETYYKTKVMPFYK----NKVVPFYKNKVIPAFEKYTAL-ADELSK 1137

Query: 86   RKKLRFNTRVRFEERYK 36
               LR  T +     YK
Sbjct: 1138 NMTLRAKTYILNSRPYK 1154


>SB_29343| Best HMM Match : PPI_Ypi1 (HMM E-Value=0.91)
          Length = 383

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 125 EKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNQV 18
           ++ S  D +D +KRK++RF     FE   ++ K +V
Sbjct: 237 DETSGNDTEDESKRKRVRFAEGTNFENERQTYKTRV 272


>SB_24332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +1

Query: 256 LSIPATKACPYGLSEVPSS*FLTTIALRP--AYRPLKTSTTLPGFIILPILEGY 411
           +S+ A+ + PY    +P+S FL ++   P   Y+PL      P  + L     Y
Sbjct: 13  VSLQASASYPYKPPRIPTSLFLVSLQAPPLYTYKPLPRIPASPSLVFLQAPPSY 66


>SB_4267| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +1

Query: 52  KRTRVLKRSFLRFAGSFRSFALNFSKL 132
           K T+ L+ +FL FA  +RSF  NFSK+
Sbjct: 61  KNTKELQ-TFLGFASYYRSFVENFSKV 86


>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
          Length = 761

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 176 VNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNQV 18
           V    + P+  T   +    SAK+ +   KRKK R + R R   ++KS K  +
Sbjct: 338 VRMQEVSPSSETSRRTVSGHSAKEDRTSKKRKKARKHKRKRKHSKHKSEKQSI 390


>SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003)
          Length = 1205

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +1

Query: 52  KRTRVLKRSFLRFAGSFRSFALNFSKL 132
           K T+ L+ +FL FA  +RSF  NFSK+
Sbjct: 677 KNTKELQ-TFLGFASYYRSFVENFSKV 702


>SB_16188| Best HMM Match : KOW (HMM E-Value=5.7e-16)
          Length = 105

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 413 EYPS-KMGKIMKPGKVVLVLSGRYAGRKAIVVKNYD 309
           ++P+ ++GK  K G  V V+ GRY G   ++V+  D
Sbjct: 58  DFPAHELGKHFKMGDHVKVIGGRYEGDTGLIVRVED 93


>SB_11435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 18/61 (29%), Positives = 33/61 (54%)
 Frame = -1

Query: 284 GHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKD 105
           GH F++ ID++ RK HK    +KI  R+ IK     ++Y+ +  T+  +D   ++  A  
Sbjct: 99  GHRFLSLIDKHFRKDHK---LSKIFNRNTIK-----ISYSCMSNTKQIIDSHSKRIIASS 150

Query: 104 L 102
           +
Sbjct: 151 I 151


>SB_31114| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = -1

Query: 266 GIDRYPRKVHKRMGKNKIHK-RSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPA 90
           GI  YP+K H R G     K +  I+ FV   N   +    +  +  F+K +   +K   
Sbjct: 9   GIVNYPKKSHHRTGGYIREKLQGYIREFVYECNLQTVTIENFYSECKFQKVTLGKIKQYT 68

Query: 89  KRK 81
           ++K
Sbjct: 69  RKK 71


>SB_2474| Best HMM Match : Methyltransf_3 (HMM E-Value=9.9)
          Length = 167

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 179 PSRKALSWTSCGFYSFPSSCALSGGTCR 262
           PS+   S+ S      PSSC  +GGT R
Sbjct: 138 PSQSRRSFESLALLQQPSSCITNGGTSR 165


>SB_50619| Best HMM Match : RnaseH (HMM E-Value=0.89)
          Length = 724

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 73  RSFLRFAGSFRSFALNFSKL 132
           ++FL FA  +RSF  NFSK+
Sbjct: 6   QTFLGFASYYRSFVKNFSKV 25


>SB_28712| Best HMM Match : K_tetra (HMM E-Value=1e-17)
          Length = 409

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 3   SFWKNHLVLPTFVPLFKTYSRVETQLLTFC 92
           +FW   + + T V L K+Y RV+ Q L +C
Sbjct: 344 TFWYAIITMTT-VGLKKSYGRVDNQFLVYC 372


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,527,794
Number of Sequences: 59808
Number of extensions: 297100
Number of successful extensions: 902
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)