Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10h19r
(437 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A) 133 4e-32
At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) simi... 133 6e-32
At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C) 131 2e-31
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 36 0.016
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 33 0.11
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 33 0.11
At4g34630.1 68417.m04918 expressed protein 29 1.4
At1g72440.1 68414.m08377 CCAAT-box-binding transcription factor-... 29 1.4
At5g12000.1 68418.m01403 protein kinase family protein contains ... 28 3.2
At3g05660.1 68416.m00630 disease resistance family protein conta... 28 3.2
At1g66070.1 68414.m07499 translation initiation factor-related s... 27 4.2
At5g52090.1 68418.m06466 tRNA-splicing endonuclease positive eff... 27 7.3
At5g37150.1 68418.m04460 tRNA-splicing endonuclease positive eff... 27 7.3
At3g23320.1 68416.m02941 hypothetical protein 27 7.3
At1g67420.1 68414.m07674 24 kDa vacuolar protein, putative simil... 26 9.7
At1g50820.1 68414.m05715 hypothetical protein 26 9.7
>At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A)
Length = 135
Score = 133 bits (322), Expect = 4e-32
Identities = 59/127 (46%), Positives = 86/127 (67%), Gaps = 1/127 (0%)
Frame = -1
Query: 398 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 219
M K MKPGK V++L GRY G+KA++VK++D+GT +K YGH VAG+ +YP KV ++
Sbjct: 1 MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60
Query: 218 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK-FSAKDLKDPAKRKKLRFNTRVRFEER 42
K K+S++K F KV+NY H+MPTRYT+D + SA + K+ + +FEER
Sbjct: 61 KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120
Query: 41 YKSGKNQ 21
+K+GKN+
Sbjct: 121 FKTGKNR 127
>At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) similar
to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum
tuberosum]
Length = 135
Score = 133 bits (321), Expect = 6e-32
Identities = 58/127 (45%), Positives = 88/127 (69%), Gaps = 1/127 (0%)
Frame = -1
Query: 398 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 219
M K +K K V++L GRYAG+KA+++K++D+GTSD+ YGH VAG+ +YP KV ++
Sbjct: 1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60
Query: 218 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKD-LKDPAKRKKLRFNTRVRFEER 42
K K+S++K F+K+VNY HLMPTRYT+D ++ + D LK K+ + + EER
Sbjct: 61 KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120
Query: 41 YKSGKNQ 21
+K+GKN+
Sbjct: 121 FKTGKNR 127
>At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)
Length = 135
Score = 131 bits (316), Expect = 2e-31
Identities = 56/127 (44%), Positives = 87/127 (68%), Gaps = 1/127 (0%)
Frame = -1
Query: 398 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 219
M K +K K V++L GRYAG+KA+++K++D+G D+PYGH VAG+ +YP KV ++
Sbjct: 1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60
Query: 218 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKD-LKDPAKRKKLRFNTRVRFEER 42
K K+S++K F+K+VNY HLMPTRYT+D ++ + D L+ K+ + + EER
Sbjct: 61 KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120
Query: 41 YKSGKNQ 21
+K+GKN+
Sbjct: 121 FKTGKNR 127
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 35.5 bits (78), Expect = 0.016
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = -1
Query: 428 VNE*REYPSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 303
VN + P+K+ + PG V+++L+GR+ G++ + +K G
Sbjct: 75 VNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSG 116
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 32.7 bits (71), Expect = 0.11
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = -1
Query: 407 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 303
P+K+ + PG V+++L+GR+ G++ + +K G
Sbjct: 82 PAKLRASITPGTVLIILAGRFKGKRVVFLKQLASG 116
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 32.7 bits (71), Expect = 0.11
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = -1
Query: 407 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 303
P+K+ + PG V+++L+GR+ G++ + +K G
Sbjct: 82 PTKLRASITPGTVLIILAGRFKGKRVVFLKQLASG 116
>At4g34630.1 68417.m04918 expressed protein
Length = 199
Score = 29.1 bits (62), Expect = 1.4
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -1
Query: 311 DEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSK 198
D+G D+ Y ++ + PR V K++G+ ++ K K
Sbjct: 130 DDGEEDREYDDSYDLDEELVPRSVSKKVGRQRMRKLGK 167
>At1g72440.1 68414.m08377 CCAAT-box-binding transcription
factor-related similar to CCAAT-box-binding transcription
factor (CCAAT-binding factor) (CBF) (Swiss-Prot:Q03701)
[Homo sapiens], GB:P53569 [Mus musculus]
Length = 1056
Score = 29.1 bits (62), Expect = 1.4
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -1
Query: 233 RMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKK 78
R K K KR + PF + Y HL+ D K K +P K+KK
Sbjct: 1000 RSKKKKKEKRKRKSPFASLEEYKHLIDQDEKED---SKTKRKATSEPTKKKK 1048
>At5g12000.1 68418.m01403 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 703
Score = 27.9 bits (59), Expect = 3.2
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -1
Query: 260 DRYPRKVHKRMGKNKIHKR-SKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKR 84
DR PR +R G+N + +R S K V H +PT ++DF++E K ++ R
Sbjct: 188 DRSPRS--QRNGRNTVPERYSHENKGFKPVREMHKIPTNGSLDFNYEFRQGKGQRNSTGR 245
>At3g05660.1 68416.m00630 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
pimpinellifolium] gi|1184077|gb|AAC15780
Length = 883
Score = 27.9 bits (59), Expect = 3.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 7 SGRTTWFFPLLYLSSKRTRVLKRSFLRFAGSFRS 108
S + WFF +LY+++ R R RS + F +F S
Sbjct: 849 SSKPRWFFKVLYINNSRRRRRTRSEVPFPLTFCS 882
>At1g66070.1 68414.m07499 translation initiation factor-related
similar to Eukaryotic translation initiation factor 3
subunit 1 (eIF-3 alpha) (eIF3 p35) (eIF3j)
(Swiss-Prot:O75822) [Homo sapiens]
Length = 226
Score = 27.5 bits (58), Expect = 4.2
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = -1
Query: 200 KIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNQ 21
+IKP+ K +Y L+ T + S A D+KD A N +++ E+ +GK +
Sbjct: 139 RIKPYEKSYHYIALLKT--IMRLSLTNMKAADVKDVASSITTIANEKLKAEKEAAAGKKK 196
>At5g52090.1 68418.m06466 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 676
Score = 26.6 bits (56), Expect = 7.3
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -1
Query: 281 HAFVAGID-RYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKD 105
HA + G + + P VH M + RS + V + + HL+ +Y + S +F K+
Sbjct: 391 HAILIGDEFQLPAMVHNEMCEKAKFGRSLFERLVLLGHNKHLLDVQYRMHPSISRFPNKE 450
>At5g37150.1 68418.m04460 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 839
Score = 26.6 bits (56), Expect = 7.3
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -1
Query: 281 HAFVAGID-RYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKD 105
HA + G + + P VH M + RS + V + + HL+ +Y + S +F K+
Sbjct: 554 HAILIGDEFQLPAMVHNEMCEKAKFGRSLFERLVLLGHNKHLLDVQYRMHPSISRFPNKE 613
>At3g23320.1 68416.m02941 hypothetical protein
Length = 191
Score = 26.6 bits (56), Expect = 7.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 387 NEAG*SSAGLKWPVRGSQG 331
N AG +GL+W +R SQG
Sbjct: 46 NHAGRQDSGLRWIIRNSQG 64
>At1g67420.1 68414.m07674 24 kDa vacuolar protein, putative similar
to 24 kDa vacuolar protein VP24 [Ipomoea batatas]
gi|5821406|dbj|BAA83809
Length = 873
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 134 SQLYNVLASSDYSLQPSRKALSWTSCGFYSFPSSCALSGG 253
S V + ++PS +A W + GFY+F +S G
Sbjct: 472 SHFQGVSSKKIMKVEPSDEARFWGAFGFYAFATSAYFFAG 511
>At1g50820.1 68414.m05715 hypothetical protein
Length = 528
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 324 SQELRRRYLRQAVRACFRRWYRQVPPESAQED 229
S RR+Y++QA R +QVP ++ ++D
Sbjct: 476 STNKRRKYMKQAHRGTMGLCQKQVPSDNDEDD 507
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,080,631
Number of Sequences: 28952
Number of extensions: 203647
Number of successful extensions: 619
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -