Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10h19f
(493 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A) 151 3e-37
At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) simi... 150 4e-37
At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C) 148 2e-36
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 36 0.020
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 33 0.14
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 33 0.14
At5g63900.1 68418.m08023 PHD finger family protein contains Pfam... 30 0.74
At4g34630.1 68417.m04918 expressed protein 29 1.7
At1g72440.1 68414.m08377 CCAAT-box-binding transcription factor-... 29 1.7
At1g66070.1 68414.m07499 translation initiation factor-related s... 29 1.7
At5g12000.1 68418.m01403 protein kinase family protein contains ... 28 3.9
At5g52090.1 68418.m06466 tRNA-splicing endonuclease positive eff... 27 9.1
At5g37150.1 68418.m04460 tRNA-splicing endonuclease positive eff... 27 9.1
At3g23320.1 68416.m02941 hypothetical protein 27 9.1
>At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A)
Length = 135
Score = 151 bits (365), Expect = 3e-37
Identities = 66/135 (48%), Positives = 93/135 (68%), Gaps = 1/135 (0%)
Frame = +1
Query: 40 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 219
M K MKPGK V++L GRY G+KA++VK++D+GT +K YGH VAG+ +YP KV ++
Sbjct: 1 MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60
Query: 220 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK-FSAKDLKDPAKRKKLRFNTRVRFEER 396
K K+S++K F KV+NY H+MPTRYT+D + SA + K+ + +FEER
Sbjct: 61 KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120
Query: 397 YKSGKNKWFFQKLRF 441
+K+GKN+WFF KLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135
>At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) similar
to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum
tuberosum]
Length = 135
Score = 150 bits (364), Expect = 4e-37
Identities = 65/135 (48%), Positives = 95/135 (70%), Gaps = 1/135 (0%)
Frame = +1
Query: 40 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 219
M K +K K V++L GRYAG+KA+++K++D+GTSD+ YGH VAG+ +YP KV ++
Sbjct: 1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60
Query: 220 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKD-LKDPAKRKKLRFNTRVRFEER 396
K K+S++K F+K+VNY HLMPTRYT+D ++ + D LK K+ + + EER
Sbjct: 61 KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120
Query: 397 YKSGKNKWFFQKLRF 441
+K+GKN+WFF KLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135
>At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)
Length = 135
Score = 148 bits (359), Expect = 2e-36
Identities = 63/135 (46%), Positives = 94/135 (69%), Gaps = 1/135 (0%)
Frame = +1
Query: 40 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 219
M K +K K V++L GRYAG+KA+++K++D+G D+PYGH VAG+ +YP KV ++
Sbjct: 1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60
Query: 220 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKD-LKDPAKRKKLRFNTRVRFEER 396
K K+S++K F+K+VNY HLMPTRYT+D ++ + D L+ K+ + + EER
Sbjct: 61 KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120
Query: 397 YKSGKNKWFFQKLRF 441
+K+GKN+WFF KLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 35.5 bits (78), Expect = 0.020
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +1
Query: 10 VNE*REYPSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 135
VN + P+K+ + PG V+++L+GR+ G++ + +K G
Sbjct: 75 VNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSG 116
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 32.7 bits (71), Expect = 0.14
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +1
Query: 31 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 135
P+K+ + PG V+++L+GR+ G++ + +K G
Sbjct: 82 PAKLRASITPGTVLIILAGRFKGKRVVFLKQLASG 116
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 32.7 bits (71), Expect = 0.14
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +1
Query: 31 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 135
P+K+ + PG V+++L+GR+ G++ + +K G
Sbjct: 82 PTKLRASITPGTVLIILAGRFKGKRVVFLKQLASG 116
>At5g63900.1 68418.m08023 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 557
Score = 30.3 bits (65), Expect = 0.74
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 367 FNTRVRFEERYKSGKNKWFF 426
+N R + E+RYKS K KWF+
Sbjct: 58 YNKRNKKEQRYKSPKGKWFY 77
>At4g34630.1 68417.m04918 expressed protein
Length = 199
Score = 29.1 bits (62), Expect = 1.7
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 127 DEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSK 240
D+G D+ Y ++ + PR V K++G+ ++ K K
Sbjct: 130 DDGEEDREYDDSYDLDEELVPRSVSKKVGRQRMRKLGK 167
>At1g72440.1 68414.m08377 CCAAT-box-binding transcription
factor-related similar to CCAAT-box-binding transcription
factor (CCAAT-binding factor) (CBF) (Swiss-Prot:Q03701)
[Homo sapiens], GB:P53569 [Mus musculus]
Length = 1056
Score = 29.1 bits (62), Expect = 1.7
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +1
Query: 205 RMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKK 360
R K K KR + PF + Y HL+ D K K +P K+KK
Sbjct: 1000 RSKKKKKEKRKRKSPFASLEEYKHLIDQDEKED---SKTKRKATSEPTKKKK 1048
>At1g66070.1 68414.m07499 translation initiation factor-related
similar to Eukaryotic translation initiation factor 3
subunit 1 (eIF-3 alpha) (eIF3 p35) (eIF3j)
(Swiss-Prot:O75822) [Homo sapiens]
Length = 226
Score = 29.1 bits (62), Expect = 1.7
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1
Query: 238 KIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNK 417
+IKP+ K +Y L+ T + S A D+KD A N +++ E+ +GK K
Sbjct: 139 RIKPYEKSYHYIALLKT--IMRLSLTNMKAADVKDVASSITTIANEKLKAEKEAAAGKKK 196
>At5g12000.1 68418.m01403 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 703
Score = 27.9 bits (59), Expect = 3.9
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 178 DRYPRKVHKRMGKNKIHKR-SKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKR 354
DR PR +R G+N + +R S K V H +PT ++DF++E K ++ R
Sbjct: 188 DRSPRS--QRNGRNTVPERYSHENKGFKPVREMHKIPTNGSLDFNYEFRQGKGQRNSTGR 245
>At5g52090.1 68418.m06466 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 676
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 157 HAFVAGID-RYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKD 333
HA + G + + P VH M + RS + V + + HL+ +Y + S +F K+
Sbjct: 391 HAILIGDEFQLPAMVHNEMCEKAKFGRSLFERLVLLGHNKHLLDVQYRMHPSISRFPNKE 450
>At5g37150.1 68418.m04460 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 839
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 157 HAFVAGID-RYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKD 333
HA + G + + P VH M + RS + V + + HL+ +Y + S +F K+
Sbjct: 554 HAILIGDEFQLPAMVHNEMCEKAKFGRSLFERLVLLGHNKHLLDVQYRMHPSISRFPNKE 613
>At3g23320.1 68416.m02941 hypothetical protein
Length = 191
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 51 NEAG*SSAGLKWPVRGSQG 107
N AG +GL+W +R SQG
Sbjct: 46 NHAGRQDSGLRWIIRNSQG 64
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,402,100
Number of Sequences: 28952
Number of extensions: 210170
Number of successful extensions: 632
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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