Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h17r
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    29   0.91 
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    28   1.6  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    27   2.1  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    27   3.7  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    26   4.9  
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    25   8.5  

>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 158 KKSSF*TIKLWSSYTFQRFYVLFVYII*ICFLRLNFSNI 42
           K S   T  +W+ YT   +++LF++I+   FL + F  +
Sbjct: 243 KASMHLTDPIWNQYTAGSWFMLFIWIVYSIFLSIFFKEV 281


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 591 IMCCQPCWLCFNNPILIC 538
           I CC   WLC +N IL+C
Sbjct: 68  INCCLNGWLCESNNILVC 85


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 541 MC-SYRQTVPVEFIARELAFESSSKALEFLNQFPLSYVGCNRTQIDCKTS 395
           MC +YR ++ +EF+A  LAFE     + F       Y   +  +I  K S
Sbjct: 326 MCKAYRPSLTMEFLANTLAFEEMEDCVNFFRSCNAVYDSKDPNRILMKES 375


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 274 IRSIWARRWRLQCCIC 321
           I SI   RW+L CCIC
Sbjct: 295 IASIPKSRWKLVCCIC 310


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/59 (22%), Positives = 29/59 (49%)
 Frame = +2

Query: 59  VLENISILYIQRVHKTFEMCKRTIILWFKNWTSSKFHSCILMSQASSHVVVTCVFGTCI 235
           + ++  + Y+Q    T + C+R ++  F+N + S+F   +L   A     +  + GT +
Sbjct: 202 IKDSTLLSYMQISRYTLKACRRLVVFGFQNPSESEFSERMLAFCAVHQRKLLSMLGTML 260


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 532 YRQTVPVEFIARELAFESSSKALEFLNQFPLSYV 431
           +  TVP+ +++R L   + SK  E   +FPLS V
Sbjct: 131 WNPTVPMAYLSRSLQGLTISKINETEQKFPLSSV 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,000,827
Number of Sequences: 5004
Number of extensions: 64310
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)