Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10h17r
(737 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0728 - 10766424-10766651 30 2.2
03_02_0226 - 6569657-6570388,6570461-6570748,6570846-6571303,657... 29 2.9
06_01_0895 + 6877386-6878475,6878577-6878838,6878932-6879017,687... 29 3.9
02_05_0716 - 31177877-31177943,31178028-31178104,31178396-311785... 29 3.9
04_04_1373 + 33025059-33025422,33025510-33025551,33025836-330260... 29 5.1
02_05_0331 + 28003454-28003912,28004649-28004873,28005017-280053... 29 5.1
06_03_1001 + 26817231-26818246,26818341-26818525,26818614-268189... 28 8.9
06_03_0832 + 25190755-25190960,25191869-25191997,25192079-251923... 28 8.9
05_05_0179 + 23022985-23023190,23024099-23024227,23024309-230245... 28 8.9
01_06_0921 - 33017892-33018953 28 8.9
>03_02_0728 - 10766424-10766651
Length = 75
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 297 MATPMLYLSCGCVITQSNMLSNRKCYILVTAVALVLQSICVRLQ-PTYDRGNW 452
+A+ L SCGC++ + ML+ +ILV A ++S + + +Y G+W
Sbjct: 6 LASYALLRSCGCLLAATAMLTAALQHILVVLDAAGMESAALEGKLASYSHGHW 58
>03_02_0226 -
6569657-6570388,6570461-6570748,6570846-6571303,
6571694-6571828,6571829-6572084,6572229-6572451,
6572533-6572661,6573570-6573775
Length = 808
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -3
Query: 261 SFIRRWHQMIQVPNTQVTTT*DEAWDIKMQEWNLEEVQFL 142
SF + +H+++ P T+ D+AW M+++NLE +L
Sbjct: 359 SFKQEFHRVLNEPQTEAEF--DKAWSDLMEQYNLESSVYL 396
>06_01_0895 +
6877386-6878475,6878577-6878838,6878932-6879017,
6879117-6879274,6879554-6879630,6879719-6879785
Length = 579
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = -3
Query: 303 SPSTGPYTSYFSFISFIRRWHQMIQVPNTQVTTT*DEAWDIKMQEWNLEEVQFLNHKIMV 124
+P+ P TS + + I W ++I+ PNT ++ W + WN E + I +
Sbjct: 408 APTAMPPTSVMTRLILIMVWRKLIRNPNT-YSSLIGLIWSLVCFRWNFEMPAIILKSISI 466
Query: 123 L 121
L
Sbjct: 467 L 467
>02_05_0716 -
31177877-31177943,31178028-31178104,31178396-31178553,
31178647-31178732,31178847-31180303
Length = 614
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = -3
Query: 309 LESPSTGPYTSYFSFISFIRRWHQMIQVPNTQVTTT*DEAWDIKMQEWNLEEVQFLNHKI 130
+ +P+ P TS + + I W ++I+ PNT ++ W + WN E + I
Sbjct: 441 MAAPTAMPPTSVMTRLILIMVWRKLIRNPNT-YSSLIGLIWSLVCFRWNFEMPAIVLKSI 499
Query: 129 MVL 121
+L
Sbjct: 500 SIL 502
>04_04_1373 +
33025059-33025422,33025510-33025551,33025836-33026054,
33026145-33026384,33026483-33027508,33027770-33028545
Length = 888
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 306 PMLYLSCGCVITQSNMLSNRKCYILVTAVALVLQS 410
PM+Y+SCGC++ + L + + ++ LV +S
Sbjct: 19 PMIYMSCGCLVEERAALMDIRASLIQANSTLVPRS 53
>02_05_0331 +
28003454-28003912,28004649-28004873,28005017-28005370,
28005673-28005702,28006869-28007342
Length = 513
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 78 YYIYKEYIKPLKCVRGP*FYGLKTGLLPNSTLA 176
Y+ + ++ V+ P FYGLK GLLP+ A
Sbjct: 139 YFGRRRWLLQFPVVQRPPFYGLKMGLLPSGKRA 171
>06_03_1001 +
26817231-26818246,26818341-26818525,26818614-26818917,
26819956-26820041,26820141-26820298,26820420-26820496,
26820586-26820652
Length = 630
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = -3
Query: 288 PYTSYFSFISFIRRWHQMIQVPNTQVTTT*DEAWDIKMQEWNLEEVQFLNHKIMVL 121
P TS + + I W ++I+ PNT ++ W + WN++ + I +L
Sbjct: 464 PPTSVMTRLILIMVWRKLIRNPNT-YSSLIGLVWSLVSFRWNIQMPSIIKGSISIL 518
>06_03_0832 +
25190755-25190960,25191869-25191997,25192079-25192301,
25192447-25192702,25193228-25193685,25193783-25194070,
25194143-25194874
Length = 763
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -3
Query: 261 SFIRRWHQMIQVPNTQVTTT*DEAWDIKMQEWNLEEVQFL 142
SF + +H+++ P T+ ++AW M+++NLE +L
Sbjct: 314 SFKQEFHRVLNEPQTEAEF--EKAWSDLMEQYNLESSVYL 351
>05_05_0179 +
23022985-23023190,23024099-23024227,23024309-23024531,
23024674-23024929,23025455-23025912,23026009-23026296,
23026369-23027100
Length = 763
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -3
Query: 261 SFIRRWHQMIQVPNTQVTTT*DEAWDIKMQEWNLEEVQFL 142
SF + +H+++ P T+ ++AW M+++NLE +L
Sbjct: 314 SFKQEFHRVLNEPQTEAEF--EKAWSDLMEQYNLESSVYL 351
>01_06_0921 - 33017892-33018953
Length = 353
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +2
Query: 137 WFKNWTSSKF--HSCILMSQASSHVVVTCVFGTCIIWCHLLMKL 262
W WT S H+C L S H +TC F ++ H++ L
Sbjct: 232 WKDYWTVSVVTKHTCFLPSVQKYHRNITCAFVASEMYAHVIDNL 275
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,118,471
Number of Sequences: 37544
Number of extensions: 373324
Number of successful extensions: 887
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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