Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h17r
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11594| Best HMM Match : F5_F8_type_C (HMM E-Value=4.4e-35)          30   1.7  
SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_985| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   2.3  
SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19)               30   2.3  
SB_31944| Best HMM Match : ET (HMM E-Value=0.86)                       29   5.2  
SB_45559| Best HMM Match : FAD_Synth (HMM E-Value=1.8)                 28   9.1  
SB_43059| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_11594| Best HMM Match : F5_F8_type_C (HMM E-Value=4.4e-35)
          Length = 1814

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = -3

Query: 561  FNNPILICA-ATDRPFLWNSSLESWHSSRVLRHLN 460
            +NN + + A AT+ P++WN  +  + S++V+ +LN
Sbjct: 1218 WNNTLFVTAPATETPYMWNHVVLFYSSTKVILYLN 1252


>SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2644

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +3

Query: 354  LSNRKCYILVTAVALVLQSICVRLQPTYDRGNWFKNSSALELDSNANSRAMNSTGT 521
            LS+  C +L T        IC  +Q T D  NW + S A  + S     A ++ GT
Sbjct: 976  LSDGACNVLSTTCTFEESHICGYMQDTTDNFNWNRGSGA-TVSSGTGPSADHTLGT 1030


>SB_985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +1

Query: 190 SFISCCSNLCVW-YLYHLVP 246
           +F++CCSN C W Y Y+ +P
Sbjct: 67  NFLNCCSNSCQWDYCYNPIP 86


>SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19)
          Length = 413

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +1

Query: 190 SFISCCSNLCVW-YLYHLVP 246
           +F++CCSN C W Y Y+ +P
Sbjct: 263 NFLNCCSNSCQWDYCYNPIP 282


>SB_31944| Best HMM Match : ET (HMM E-Value=0.86)
          Length = 152

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 149 WTSSKFHSCILMSQASSHVVVTCVFGTCIIWCHLL 253
           W  +K +S I   + +SH  +  ++GT   W +LL
Sbjct: 44  WIVNKINSSIYKPRGTSHYQMHSIYGTSFSWMNLL 78


>SB_45559| Best HMM Match : FAD_Synth (HMM E-Value=1.8)
          Length = 714

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 297 MATPMLYLSCGCVITQSNMLSNRKCYIL 380
           M  P+L +  G   T + +L N++CYIL
Sbjct: 282 MMIPILPVGLGIYFTANRILKNKECYIL 309


>SB_43059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 722

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 553 SHFNMCSYRQTVPVEFIARELAFESSSKALEFLN 452
           S F+ C+     P++ I   +AF+ S   L+F+N
Sbjct: 442 SSFSQCNGSSQSPIDIITSSVAFDQSLGELQFVN 475


>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6500

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/77 (23%), Positives = 39/77 (50%)
 Frame = +2

Query: 95   VHKTFEMCKRTIILWFKNWTSSKFHSCILMSQASSHVVVTCVFGTCIIWCHLLMKLIKLK 274
            V +TF++ K +I      +        +++  +S+ VV+   FG  +      ++++K+K
Sbjct: 1520 VKETFKLMKESIKSIINTYGRDNIRYAVMVFGSSTRVVLR--FGEALP----SLEILKMK 1573

Query: 275  *EVYGPVDGDSNVVSVL 325
             +  GP+ GD N+ + L
Sbjct: 1574 IDGVGPIPGDPNLKTAL 1590


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,734,903
Number of Sequences: 59808
Number of extensions: 452319
Number of successful extensions: 1042
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)