Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h17r
         (737 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14110.1 68414.m01668 xyloglucan fucosyltransferase family pr...    29   3.2  
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote...    28   5.6  
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote...    28   5.6  
At3g11070.1 68416.m01337 outer membrane OMP85 family protein con...    28   7.4  
At2g43470.1 68415.m05402 expressed protein                             28   7.4  
At1g02440.1 68414.m00192 ADP-ribosylation factor, putative simil...    28   7.4  
At1g02430.1 68414.m00190 ADP-ribosylation factor, putative simil...    28   7.4  
At4g36280.1 68417.m05159 ATP-binding region, ATPase-like domain-...    27   9.8  
At4g31120.1 68417.m04417 Skb1 methyltransferase family protein c...    27   9.8  
At3g16120.1 68416.m02036 dynein light chain, putative similar to...    27   9.8  
At2g48050.1 68415.m06014 expressed protein ; expression supporte...    27   9.8  

>At1g14110.1 68414.m01668 xyloglucan fucosyltransferase family
           protein contains Pfam profile: PF03254 xyloglucan
           fucosyltransferase
          Length = 907

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -1

Query: 305 SRHLRAHILLILVLSASLGGGTR*YKYQTHKLLQHEMKLGTSRCKSGIW 159
           SRH+ + +    +L    G GT+ YK  T +L  +E+      C+  +W
Sbjct: 551 SRHIVSKLRSYEMLHKRCGPGTKAYKRATKQLGHNELSSSGDECRYVVW 599


>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
           / activated protein kinase C receptor (RACK1) identical
           to guanine nucleotide-binding protein; activated protein
           kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
           thaliana}; contains Pfam profile: PF00400 WD domain,
           G-beta repeat (7 copies)
          Length = 326

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 252 RRWHQMIQV-PNTQVTTT*DEAWDIKMQEWNLEEVQFLN 139
           + W   ++  PNT V T    +WD  ++ WNL+  +  N
Sbjct: 149 KEWVSCVRFSPNTLVPTIVSASWDKTVKVWNLQNCKLRN 187


>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
           / activated protein kinase C receptor, putative / RACK,
           putative contains 7 WD-40 repeats (PF00400); very
           similar to guanine nucleotide-binding protein; activated
           protein kinase C receptor; RACK1 (GI:9294068)
           {Arabidopsis thaliana}; similar to WD-40 repeat
           auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
           thaliana];
          Length = 326

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 252 RRWHQMIQV-PNTQVTTT*DEAWDIKMQEWNLEEVQFLN 139
           + W   ++  PNT V T    +WD  ++ WNL+  +  N
Sbjct: 149 KEWVSCVRFSPNTLVPTIVSASWDKTVKVWNLQNCKLRN 187


>At3g11070.1 68416.m01337 outer membrane OMP85 family protein
           contains Pfam profile PF01103: outer membrane protein,
           OMP85 family
          Length = 520

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 140 FKNWTSSKFHSCILMSQASSHVVVTCVFGTCIIWCHLLMK 259
           F+N+T+ KF      S  +  V+ T +F   + +CH+L K
Sbjct: 463 FRNFTAPKFLETFRTSVGAGIVLPTSLFRMELNYCHILKK 502


>At2g43470.1 68415.m05402 expressed protein
          Length = 498

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 217 CVWYLYHLVPPPNEADKTKIRSIWARRW 300
           C W   H+VPP  E  + ++   +  RW
Sbjct: 446 CCWMNIHIVPPHGEVFEIRVAQGYGARW 473


>At1g02440.1 68414.m00192 ADP-ribosylation factor, putative similar
           to ADP-ribosylation factor GB:AAA32729 GI:166586 from
           (Arabidopsis thaliana)
          Length = 190

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 253 NEADKTKIRSI-WARRWRLQCCICLAAVSLHKAICYLTEN 369
           N+ D T +R   W R W +Q     +   LH+ + +L +N
Sbjct: 147 NKLDLTSLRKKNWQRNWHVQSSCAFSGDGLHEGLDWLLKN 186


>At1g02430.1 68414.m00190 ADP-ribosylation factor, putative similar
           to ADP-ribosylation factor GI:166586 from [Arabidopsis
           thaliana]
          Length = 157

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 253 NEADKTKIRSI-WARRWRLQCCICLAAVSLHKAICYLTEN 369
           N+ D T +R   W R W +Q     +   LH+ + +L +N
Sbjct: 114 NKLDLTSLRQKNWQRNWHVQSSCAFSGDGLHEGLDWLLKN 153


>At4g36280.1 68417.m05159 ATP-binding region, ATPase-like
           domain-containing protein low similarity to microrchidia
           [Mus musculus] GI:5410255; contains Pfam profile
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein
          Length = 626

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
 Frame = -3

Query: 198 DEAWDIKMQEWNLEEVQFLNHKIMVL-LHISKVLCTLCIYNIDMFSKT*FLKYFKN 34
           D+  DI++++ ++ + + L+HKI+ L  HIS  L     Y++  ++   +LK FKN
Sbjct: 289 DDEEDIRLRDESVNDGKRLHHKILELRSHISYHL----RYSLRAYASMLYLKKFKN 340


>At4g31120.1 68417.m04417 Skb1 methyltransferase family protein
           contains Pfam profile:  PF05185 Skb1 methyltransferase
          Length = 642

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
 Frame = +1

Query: 172 LHLDVP---SFISCCSNLCVWYLYHL-VPPPNEADKTKIRSIW 288
           +H D P    F  CC +  VWY + +  P P+    T  RS W
Sbjct: 597 VHPDTPLEVHFWRCCGSSKVWYEWSVSSPTPSPMHNTNGRSYW 639


>At3g16120.1 68416.m02036 dynein light chain, putative similar to
           SP|O02414 Dynein light chain LC6, flagellar outer arm
           {Anthocidaris crassispina}; contains Pfam profile
           PF01221: Dynein light chain type 1
          Length = 93

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 518 NGLSVAAHIKMGLLKHSQQGWQHIIIGTN 604
           + +S+AAHIK    +    GWQ  ++GTN
Sbjct: 36  DSISIAAHIKKEFDERYGSGWQ-CVVGTN 63


>At2g48050.1 68415.m06014 expressed protein ; expression supported
           by MPSS
          Length = 1500

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/56 (25%), Positives = 30/56 (53%)
 Frame = -1

Query: 203 HEMKLGTSRCKSGIWKKSSF*TIKLWSSYTFQRFYVLFVYII*ICFLRLNFSNILK 36
           H+MK  + R  S +W+  SF T  +W+   + R Y  +V+++ +  + +  +  L+
Sbjct: 565 HQMK--SQRKNSFVWRDLSFETKSMWTVLDYLRLY-CYVHLLDVVLILILITGTLE 617


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,159,641
Number of Sequences: 28952
Number of extensions: 318056
Number of successful extensions: 756
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)