Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h17f
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    26   5.0  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    25   6.6  
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.8  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   8.8  

>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 473 VHTFHHGNCYMDDEKHHTSMDYDLEVNQSLFAVEAP 366
           +HT     C+M     HT   Y L + +++  V AP
Sbjct: 340 IHTHPTQTCFMSSVDLHTHCSYQLMLPEAIAIVMAP 375


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 374 PLQTMTGLPPNHNPWMYGVFHHPYN 448
           PL  + G+P +   W+Y   H+P+N
Sbjct: 642 PLVKVCGVPRDTLQWLYFSNHYPFN 666


>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +3

Query: 30  DLHSKYLDQNYFKGVKLGEET*NVSAIATSSIYC 131
           D HS Y+  NY K     E T   + I   +I C
Sbjct: 26  DEHSLYILDNYLKNANCSENTYEQALILCLTIMC 59


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1213

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +1

Query: 103  VQLLRPPFIVIY----YNIQEYYLNIQDVCNNRLSLSSPFCFCKK*W 231
            + LL+ P+ V +    Y     +L I   C+  L+LS  FCF  K W
Sbjct: 1003 IDLLKLPWAVFHIFLRYLFSHSFLVIIFACSVILNLSLMFCFGAKYW 1049


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,547,631
Number of Sequences: 5004
Number of extensions: 52058
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)