Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h17f
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)                   29   2.3  
SB_35146| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_25527| Best HMM Match : Fil_haemagg (HMM E-Value=9.6)               28   7.0  
SB_23302| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_14845| Best HMM Match : DUF983 (HMM E-Value=0.015)                  27   9.2  

>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
          Length = 2157

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +2

Query: 362 AKEPPLQTMTGLPPNHNPWMYGVFHH----PYNNYHGGMYAPYY 481
           A +P    + G P  H+ +M+  +HH    PY++Y G +Y  YY
Sbjct: 227 AVDPYTHQILG-PLYHHHYMWPPYHHYMGPPYHHYMGSLYHHYY 269



 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -2

Query: 500 HD*NIDYNKVHTFHHGNCYMDDEKHHTSMDYDLEVNQSLFAV 375
           H+ N+D+ + H +H+GN  MDD   +T    D  V+ ++ A+
Sbjct: 382 HNGNLDHYQEHPYHYGNT-MDDHVGNTVGGMDNHVDNTVGAM 422


>SB_35146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 272 YSPYRFLCENLSYGHYFLQKQNGDD 198
           YS +R LCE L Y  +F +  + DD
Sbjct: 27  YSSHRILCEKLKYAVHFCKSIDSDD 51


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 272  YSPYRFLCENLSYGHYFLQKQNGDD 198
            YS +R LCE L Y  +F +  + DD
Sbjct: 3548 YSSHRILCEKLKYAVHFCKSIDSDD 3572


>SB_25527| Best HMM Match : Fil_haemagg (HMM E-Value=9.6)
          Length = 105

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 618 KGRFTPGRGALSKGGGF 568
           KGRF+ G G +++GGGF
Sbjct: 31  KGRFSVGEGLVAEGGGF 47


>SB_23302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 653

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -2

Query: 335 KQINQLLQGIPAGNYVPVRSSYSPYRFLCENLSYGH--YFLQKQNGDDKESRLLHTS 171
           KQ N    G P    +   S++ P +F  +        +  Q QNG  ++ R++HTS
Sbjct: 355 KQENSDQNGQPNSKRIRALSAHQPDQFQKQQQQQQQQSFAFQTQNGQQQQQRVVHTS 411


>SB_14845| Best HMM Match : DUF983 (HMM E-Value=0.015)
          Length = 254

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
 Frame = -2

Query: 506 YQHD*NIDYNKVHTFHHGNCYMDDEKH---HTSMDY 408
           Y H+   DYN  +    G  Y DD+ H   H   DY
Sbjct: 50  YNHECGFDYNDDYNHECGFDYNDDDNHNCGHADADY 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,203,252
Number of Sequences: 59808
Number of extensions: 403900
Number of successful extensions: 896
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)