Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h17f
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99942-7|CAB17070.2|  462|Caenorhabditis elegans Hypothetical pr...    31   0.50 
AF016435-4|AAB65880.2|  330|Caenorhabditis elegans Serpentine re...    29   2.0  
Z66519-7|CAA91378.2|  338|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AL132865-2|CAB60593.1|  176|Caenorhabditis elegans Hypothetical ...    28   6.1  

>Z99942-7|CAB17070.2|  462|Caenorhabditis elegans Hypothetical
           protein H13N06.5 protein.
          Length = 462

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 542 TRCIDDGGYRHYYQHD*NIDYNKVHTFHHGNCYMDDEKHHTSMDYD 405
           T    D G+ H + H    D+   H  HHG+ + ++E HH    +D
Sbjct: 72  TAAAHDHGHAHDHDHGHAHDHGHAHD-HHGHSHDEEEDHHHGHAHD 116


>AF016435-4|AAB65880.2|  330|Caenorhabditis elegans Serpentine
           receptor, class w protein8 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 467 TFHHGNCYMDDEKHHTSMDYDLEVNQSLFAV 375
           +++H   Y D++  H   DYD ++    F V
Sbjct: 11  SYYHDEAYTDEDPEHDIFDYDYDIKHDYFDV 41


>Z66519-7|CAA91378.2|  338|Caenorhabditis elegans Hypothetical
           protein B0334.7 protein.
          Length = 338

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = -2

Query: 416 MDYDLEVNQSLFAVEAP*HYCQTSLTAKQINQLLQGIPAGNYVPVRSSYSPYRFLCENLS 237
           +D   +V+  +  +  P  YC  S+  +Q NQ+   I A   + +    S    +C N +
Sbjct: 244 IDMIFQVSMPVVVIVLPMIYCFYSIVWQQYNQMFNNI-AIMCISLHGMCSTITMICLNPT 302

Query: 236 YGHYFL 219
           Y H+ L
Sbjct: 303 YRHFTL 308


>Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical
           protein C33G3.6 protein.
          Length = 624

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 422 YGVFHHPYNNYHGGMYAPY 478
           YG  +HPYNN+H   Y PY
Sbjct: 419 YGRNYHPYNNHH-QQYNPY 436


>AL132865-2|CAB60593.1|  176|Caenorhabditis elegans Hypothetical
           protein Y62E10A.3 protein.
          Length = 176

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 206 HFVFVRNSGRN*DFHTRIYKGNKNFSQERNCLQ-EYLAVVGLFV*LLRMSGNN 361
           HF+ ++   RN  F TRI K +  F      L+ +Y+    L + + R+ G N
Sbjct: 124 HFIKMKEKNRNKYFTTRIVKVSTGFIYSSEVLEWKYMDPRALLLKIARLCGEN 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,202,937
Number of Sequences: 27780
Number of extensions: 303321
Number of successful extensions: 688
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)