Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h17f
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim...    33   0.20 
At2g28610.1 68415.m03478 homeobox-leucine zipper transcription f...    29   1.9  
At1g32700.1 68414.m04032 zinc-binding family protein similar to ...    28   5.7  
At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ...    27   10.0 
At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ...    27   10.0 
At3g25790.1 68416.m03210 myb family transcription factor contain...    27   10.0 
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical...    27   10.0 
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical...    27   10.0 
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical...    27   10.0 

>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
           similar to PRLI-interacting factor L [Arabidopsis
           thaliana] GI:11139268; contains Pfam profile PF02492:
           Cobalamin synthesis protein/P47K
          Length = 444

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = -2

Query: 530 DDGGYRHYYQHD*NIDYNKVHTFHHGNCYMDDEKHHTSMDYDLEVNQSLFAVEAP*HYCQ 351
           DD G  H + HD + D+N  H  HH + +   + HH S D+  +   S  ++      C+
Sbjct: 306 DDKGDHHDHDHDHHHDHNHDHDHHHHDGH---DHHHHSHDHTHDPGVSSVSI-----VCE 357

Query: 350 TSLTAKQINQLL 315
            SL  ++ N  L
Sbjct: 358 GSLDLEKANMWL 369


>At2g28610.1 68415.m03478 homeobox-leucine zipper transcription
           factor (PRESSED FLOWER) identical to PRESSED FLOWER
           (GP:17907768) {Arabidopsis thaliana}
          Length = 244

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 341 LRMSGNNAKEPPLQTMTGLPPNHNPW-MYGVFHHPYNNYHGGMYAPYYNQYF 493
           L++     K  P+ +M   P N N    +  +HH ++N+H   + PY +  F
Sbjct: 83  LQLQLQQIKPKPISSMISQPVNKNIIDHHNPYHHHHHNHHHNHHRPYDHMSF 134


>At1g32700.1 68414.m04032 zinc-binding family protein similar to
           zinc-binding protein [Pisum sativum] GI:16117799;
           contains Pfam profile PF04640 : Protein of unknown
           function, DUF597
          Length = 213

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 44  VLRSKLF*RCKIR*RNVKCECNCYVL 121
           +LR K F +CK+   + K ECN Y L
Sbjct: 18  LLREKFFVQCKLHADSHKSECNMYCL 43


>At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to
           nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
           cDNA provides a truncated ORF likely due to a skipped
           exon. An alternative ORF is provided.
          Length = 383

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
 Frame = +2

Query: 422 YGVFHHPYNNYHGGMYAPYYNQYFXXXXXXXXXXXXXXX---ESEFGMNQASNPPPLLRA 592
           Y  +HH +N+ H   + P   Q                     S F  N    PPP L +
Sbjct: 5   YQNYHHHHNHNHQQQWRPAPTQPNICPICTVPHFPFCPPYPPPSSFAYNPNFPPPPHLNS 64

Query: 593 PRPG 604
           PRPG
Sbjct: 65  PRPG 68


>At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to
           nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
           cDNA provides a truncated ORF likely due to a skipped
           exon. An alternative ORF is provided.
          Length = 661

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
 Frame = +2

Query: 422 YGVFHHPYNNYHGGMYAPYYNQYFXXXXXXXXXXXXXXX---ESEFGMNQASNPPPLLRA 592
           Y  +HH +N+ H   + P   Q                     S F  N    PPP L +
Sbjct: 5   YQNYHHHHNHNHQQQWRPAPTQPNICPICTVPHFPFCPPYPPPSSFAYNPNFPPPPHLNS 64

Query: 593 PRPG 604
           PRPG
Sbjct: 65  PRPG 68


>At3g25790.1 68416.m03210 myb family transcription factor contains
           Pfam domain, PF00249: Myb-like DNA-binding domain
          Length = 357

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -3

Query: 253 CVKILVTATISYKNKMATTKKVDCYIRLGCSNNILGYCNK 134
           CV+++  A  +YK +++ T   + Y +  CS    G C +
Sbjct: 42  CVELVTQAIEAYKREISGTSTDNLYGQSECSEQTTGECGR 81


>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
           histidine kinase AHK4 [Arabidopsis thaliana]
           gi|13537200|dbj|BAB40776; contains Pfam profiles
           PF03924: CHASE domain,  PF02518:  ATPase, histidine
           kinase-, DNA gyrase B-, and HSP90-like domain protein,
           PF00512:  His Kinase A (phosphoacceptor) domain,
           PF00072:  Response regulator receiver domain
          Length = 1057

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -2

Query: 335 KQINQLLQGIPAGNYVPVRSSYSPYRFLCENLSYGHYFLQKQNGDDKESRL 183
           +Q N +++ +  G   PVR  Y+P  F  +++SY          +D+E+ L
Sbjct: 217 RQHNWVIKTMDRGEPSPVRDEYAPVIFSQDSVSYLESLDMMSGEEDRENIL 267


>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
           histidine kinase AHK4 [Arabidopsis thaliana]
           gi|13537200|dbj|BAB40776; contains Pfam profiles
           PF03924: CHASE domain,  PF02518:  ATPase, histidine
           kinase-, DNA gyrase B-, and HSP90-like domain protein,
           PF00512:  His Kinase A (phosphoacceptor) domain,
           PF00072:  Response regulator receiver domain
          Length = 1080

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -2

Query: 335 KQINQLLQGIPAGNYVPVRSSYSPYRFLCENLSYGHYFLQKQNGDDKESRL 183
           +Q N +++ +  G   PVR  Y+P  F  +++SY          +D+E+ L
Sbjct: 240 RQHNWVIKTMDRGEPSPVRDEYAPVIFSQDSVSYLESLDMMSGEEDRENIL 290


>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
           histidine kinase AHK4 [Arabidopsis thaliana]
           gi|13537200|dbj|BAB40776; contains Pfam profiles
           PF03924: CHASE domain,  PF02518:  ATPase, histidine
           kinase-, DNA gyrase B-, and HSP90-like domain protein,
           PF00512:  His Kinase A (phosphoacceptor) domain,
           PF00072:  Response regulator receiver domain
          Length = 1057

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -2

Query: 335 KQINQLLQGIPAGNYVPVRSSYSPYRFLCENLSYGHYFLQKQNGDDKESRL 183
           +Q N +++ +  G   PVR  Y+P  F  +++SY          +D+E+ L
Sbjct: 217 RQHNWVIKTMDRGEPSPVRDEYAPVIFSQDSVSYLESLDMMSGEEDRENIL 267


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,291,102
Number of Sequences: 28952
Number of extensions: 282666
Number of successful extensions: 751
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)