Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h16r
         (730 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000E1FFEC Cluster: PREDICTED: similar to ribosome a...    44   0.003
UniRef50_Q8SYY6 Cluster: RE27904p; n=8; Coelomata|Rep: RE27904p ...    44   0.003
UniRef50_Q9Y6X1 Cluster: Ribosome-attached membrane protein 4; n...    44   0.003
UniRef50_Q7ZUJ1 Cluster: Zgc:56419; n=5; Euteleostomi|Rep: Zgc:5...    44   0.004
UniRef50_Q5BTC1 Cluster: SJCHGC02042 protein; n=1; Schistosoma j...    38   0.25 
UniRef50_Q8MXH3 Cluster: Putative uncharacterized protein T09A12...    36   1.3  
UniRef50_O77382 Cluster: Kinesin-related protein, putative; n=2;...    33   7.2  

>UniRef50_UPI0000E1FFEC Cluster: PREDICTED: similar to ribosome
           attached membrane protein 4; n=1; Pan troglodytes|Rep:
           PREDICTED: similar to ribosome attached membrane protein
           4 - Pan troglodytes
          Length = 231

 Score = 44.4 bits (100), Expect = 0.003
 Identities = 20/23 (86%), Positives = 22/23 (95%)
 Frame = -2

Query: 729 LXALFIFVVCGSAVFQIIQSIRL 661
           L ALFIFVVCGSA+FQIIQSIR+
Sbjct: 207 LLALFIFVVCGSAIFQIIQSIRM 229


>UniRef50_Q8SYY6 Cluster: RE27904p; n=8; Coelomata|Rep: RE27904p -
           Drosophila melanogaster (Fruit fly)
          Length = 64

 Score = 44.4 bits (100), Expect = 0.003
 Identities = 20/24 (83%), Positives = 22/24 (91%)
 Frame = -2

Query: 729 LXALFIFVVCGSAVFQIIQSIRLA 658
           L ALFIFVVCGSA+FQI+QSIR A
Sbjct: 41  LLALFIFVVCGSAIFQIVQSIRAA 64


>UniRef50_Q9Y6X1 Cluster: Ribosome-attached membrane protein 4;
           n=33; Eumetazoa|Rep: Ribosome-attached membrane protein
           4 - Homo sapiens (Human)
          Length = 66

 Score = 44.4 bits (100), Expect = 0.003
 Identities = 20/23 (86%), Positives = 22/23 (95%)
 Frame = -2

Query: 729 LXALFIFVVCGSAVFQIIQSIRL 661
           L ALFIFVVCGSA+FQIIQSIR+
Sbjct: 42  LLALFIFVVCGSAIFQIIQSIRM 64


>UniRef50_Q7ZUJ1 Cluster: Zgc:56419; n=5; Euteleostomi|Rep:
           Zgc:56419 - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 66

 Score = 44.0 bits (99), Expect = 0.004
 Identities = 19/23 (82%), Positives = 22/23 (95%)
 Frame = -2

Query: 729 LXALFIFVVCGSAVFQIIQSIRL 661
           L ALF+FVVCGSA+FQIIQSIR+
Sbjct: 42  LLALFVFVVCGSAIFQIIQSIRM 64


>UniRef50_Q5BTC1 Cluster: SJCHGC02042 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC02042 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 79

 Score = 37.9 bits (84), Expect = 0.25
 Identities = 16/24 (66%), Positives = 20/24 (83%)
 Frame = -2

Query: 729 LXALFIFVVCGSAVFQIIQSIRLA 658
           +  L +FVVCGSAVF+IIQ IR+A
Sbjct: 55  ILGLIVFVVCGSAVFEIIQHIRMA 78


>UniRef50_Q8MXH3 Cluster: Putative uncharacterized protein T09A12.5;
           n=2; Bilateria|Rep: Putative uncharacterized protein
           T09A12.5 - Caenorhabditis elegans
          Length = 63

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 14/23 (60%), Positives = 20/23 (86%)
 Frame = -2

Query: 729 LXALFIFVVCGSAVFQIIQSIRL 661
           L  LFIFVVCGSA+F++I+ I++
Sbjct: 41  LIGLFIFVVCGSAIFEVIRYIKV 63


>UniRef50_O77382 Cluster: Kinesin-related protein, putative; n=2;
            Plasmodium|Rep: Kinesin-related protein, putative -
            Plasmodium falciparum (isolate 3D7)
          Length = 1619

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 20/54 (37%), Positives = 29/54 (53%)
 Frame = +1

Query: 292  NRKNIQIKKNDYFIHYILMEFVA*VVFKNYIEKETKIHRKFYNRYLNVPNNLMY 453
            N  N  IK+     H +L   ++ +  K+YIE+  K H K  N  LN+ NNL+Y
Sbjct: 1051 NNINNDIKRKITNYHTVLYNILSYLKRKSYIEE--KEHSKCLNDTLNIYNNLLY 1102


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 645,823,162
Number of Sequences: 1657284
Number of extensions: 12117516
Number of successful extensions: 24616
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24605
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)