BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10h16r (730 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81095-2|CAB03157.1| 65|Caenorhabditis elegans Hypothetical pr... 36 0.030 AF047660-4|AAM54169.1| 63|Caenorhabditis elegans Hypothetical ... 36 0.039 Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p... 29 3.4 Z81583-4|CAB04669.1| 323|Caenorhabditis elegans Hypothetical pr... 28 7.9 AF016676-1|AAG24103.1| 598|Caenorhabditis elegans Hypothetical ... 28 7.9 >Z81095-2|CAB03157.1| 65|Caenorhabditis elegans Hypothetical protein F59F4.2 protein. Length = 65 Score = 35.9 bits (79), Expect = 0.030 Identities = 14/23 (60%), Positives = 20/23 (86%) Frame = -2 Query: 729 LXALFIFVVCGSAVFQIIQSIRL 661 L LF+FVVCGSAVF+II+ +++ Sbjct: 41 LIGLFVFVVCGSAVFEIIRYVKM 63 >AF047660-4|AAM54169.1| 63|Caenorhabditis elegans Hypothetical protein T09A12.5 protein. Length = 63 Score = 35.5 bits (78), Expect = 0.039 Identities = 14/23 (60%), Positives = 20/23 (86%) Frame = -2 Query: 729 LXALFIFVVCGSAVFQIIQSIRL 661 L LFIFVVCGSA+F++I+ I++ Sbjct: 41 LIGLFIFVVCGSAIFEVIRYIKV 63 >Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical protein F40G12.3 protein. Length = 1099 Score = 29.1 bits (62), Expect = 3.4 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%) Frame = -1 Query: 694 CCVPD--NPINKTSLNHEDNWRTA 629 CC P+ N +N S+ H NWRTA Sbjct: 136 CCFPEVVNYLNTHSVGHVKNWRTA 159 >Z81583-4|CAB04669.1| 323|Caenorhabditis elegans Hypothetical protein T02G6.4 protein. Length = 323 Score = 27.9 bits (59), Expect = 7.9 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = -1 Query: 709 RSVWLCCVPDNPINKTSLNHEDNWRT 632 RS+W CC+P N S + WRT Sbjct: 275 RSMWSCCIPTTYYNNYSNALKIAWRT 300 >AF016676-1|AAG24103.1| 598|Caenorhabditis elegans Hypothetical protein F41B5.6 protein. Length = 598 Score = 27.9 bits (59), Expect = 7.9 Identities = 19/55 (34%), Positives = 26/55 (47%) Frame = -1 Query: 613 K*QHYPSKVKAQFTPASLHRHERECFRRRPLVPLTVQSWLDVSFTLTGLKRDADT 449 K H+P V+ S+H E ++PLV LT LD S T +K + DT Sbjct: 348 KANHHPLSVQHHLQQNSVHTSIAERIDQQPLVELTSGIHLD-SSTAVKIKSNLDT 401 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,528,726 Number of Sequences: 27780 Number of extensions: 313079 Number of successful extensions: 712 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 601 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 712 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1718929214 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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