Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h16r
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81095-2|CAB03157.1|   65|Caenorhabditis elegans Hypothetical pr...    36   0.030
AF047660-4|AAM54169.1|   63|Caenorhabditis elegans Hypothetical ...    36   0.039
Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z81583-4|CAB04669.1|  323|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AF016676-1|AAG24103.1|  598|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z81095-2|CAB03157.1|   65|Caenorhabditis elegans Hypothetical
           protein F59F4.2 protein.
          Length = 65

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 14/23 (60%), Positives = 20/23 (86%)
 Frame = -2

Query: 729 LXALFIFVVCGSAVFQIIQSIRL 661
           L  LF+FVVCGSAVF+II+ +++
Sbjct: 41  LIGLFVFVVCGSAVFEIIRYVKM 63


>AF047660-4|AAM54169.1|   63|Caenorhabditis elegans Hypothetical
           protein T09A12.5 protein.
          Length = 63

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 14/23 (60%), Positives = 20/23 (86%)
 Frame = -2

Query: 729 LXALFIFVVCGSAVFQIIQSIRL 661
           L  LFIFVVCGSA+F++I+ I++
Sbjct: 41  LIGLFIFVVCGSAIFEVIRYIKV 63


>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
           protein F40G12.3 protein.
          Length = 1099

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -1

Query: 694 CCVPD--NPINKTSLNHEDNWRTA 629
           CC P+  N +N  S+ H  NWRTA
Sbjct: 136 CCFPEVVNYLNTHSVGHVKNWRTA 159


>Z81583-4|CAB04669.1|  323|Caenorhabditis elegans Hypothetical
           protein T02G6.4 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 709 RSVWLCCVPDNPINKTSLNHEDNWRT 632
           RS+W CC+P    N  S   +  WRT
Sbjct: 275 RSMWSCCIPTTYYNNYSNALKIAWRT 300


>AF016676-1|AAG24103.1|  598|Caenorhabditis elegans Hypothetical
           protein F41B5.6 protein.
          Length = 598

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -1

Query: 613 K*QHYPSKVKAQFTPASLHRHERECFRRRPLVPLTVQSWLDVSFTLTGLKRDADT 449
           K  H+P  V+      S+H    E   ++PLV LT    LD S T   +K + DT
Sbjct: 348 KANHHPLSVQHHLQQNSVHTSIAERIDQQPLVELTSGIHLD-SSTAVKIKSNLDT 401


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,528,726
Number of Sequences: 27780
Number of extensions: 313079
Number of successful extensions: 712
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)