Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h16r
         (730 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31960.1 68414.m03929 hypothetical protein                          29   4.2  
At5g35010.1 68418.m04132 hypothetical protein similar to At3g243...    28   5.5  
At1g05490.1 68414.m00559 C protein immunoglobulin-A-binding beta...    28   7.3  
At1g27350.1 68414.m03331 expressed protein contains 1 transmembr...    27   9.6  
At1g27330.1 68414.m03329 expressed protein similar to EST gb|AA6...    27   9.6  

>At1g31960.1 68414.m03929 hypothetical protein
          Length = 173

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 468 NPVSVKETSSHDCTVKGTNGRLRKHSL 548
           NP S++     D  VKG+NG +R HS+
Sbjct: 105 NPTSIRRKLFDDAGVKGSNGVVRFHSV 131


>At5g35010.1 68418.m04132 hypothetical protein similar to At3g24380,
           At5g36840, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790
          Length = 230

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 548 ERVFSEAAISTFNCAIVA*CLFHTYRVKTGRRYIRLLGTLRYRL 417
           ER+    A +TF CAI+  C  + +    G  Y+RL G+  Y L
Sbjct: 115 ERIAPRNAAATFTCAILYICAGNAH---MGGVYLRLFGSNHYAL 155


>At1g05490.1 68414.m00559 C protein immunoglobulin-A-binding beta
           antigen-related contains weak similarity to C protein
           immunoglobulin-A-binding beta antigen [Streptococcus
           agalactiae] gi|18028989|gb|AAL56250
          Length = 731

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 76  TSDHRLWTLCVFFFKSTID*GNEFFLTFIKC 168
           + + RLW    FF KS    GNE F   I C
Sbjct: 690 SEEDRLWEELAFFTKSNDIGGNELFSNVISC 720


>At1g27350.1 68414.m03331 expressed protein contains 1 transmembrane
           domain; similar to ribosome associated membrane protein
           RAMP4 GI:4585827 [Rattus norvegicus]; similar to ESTs
           gb|T20610 and gb|AA586199
          Length = 68

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 729 LXALFIFVVCGSAVFQIIQS 670
           L   F+FVV GS++FQII++
Sbjct: 42  LLGFFVFVVIGSSLFQIIRT 61


>At1g27330.1 68414.m03329 expressed protein similar to EST
           gb|AA650671 and gb|T20610
          Length = 68

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 729 LXALFIFVVCGSAVFQIIQS 670
           L   F+FVV GS++FQII++
Sbjct: 42  LLGFFVFVVIGSSLFQIIRT 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,169,992
Number of Sequences: 28952
Number of extensions: 272954
Number of successful extensions: 479
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)