Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h14r
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81593-5|CAB04743.1|  332|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AL110487-7|CAB54431.1|  581|Caenorhabditis elegans Hypothetical ...    28   6.2  
AC024779-2|AAK68485.1|  299|Caenorhabditis elegans Serpentine re...    28   8.2  
AC024779-1|AAP86615.1|  304|Caenorhabditis elegans Serpentine re...    28   8.2  

>Z81593-5|CAB04743.1|  332|Caenorhabditis elegans Hypothetical
           protein T20B3.5 protein.
          Length = 332

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -1

Query: 288 GNIPPSI*SHKILFFRIP*KYFCSLCIVF--SLFL*IWLLCLTHD 160
           G +PP +   ++ +  I  +YF   C VF  ++F  +W   L  D
Sbjct: 173 GCVPPYVDLERVFYLIITKRYFLITCAVFICTMFAEVWFFALVTD 217


>AL110487-7|CAB54431.1|  581|Caenorhabditis elegans Hypothetical
           protein Y39E4B.10 protein.
          Length = 581

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 7/26 (26%), Positives = 19/26 (73%)
 Frame = -2

Query: 491 NFLCECSKLDVHQRYLVIKNNILATL 414
           +FLC+C+  +VH ++ ++  N++ ++
Sbjct: 97  SFLCQCTSPEVHLKFKILMENVIKSV 122


>AC024779-2|AAK68485.1|  299|Caenorhabditis elegans Serpentine
           receptor, class x protein50, isoform a protein.
          Length = 299

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 578 FRGVKKKTLSQRIGHHK 628
           FRG+K K LS  IGHH+
Sbjct: 269 FRGIKIKDLSGHIGHHQ 285


>AC024779-1|AAP86615.1|  304|Caenorhabditis elegans Serpentine
           receptor, class x protein50, isoform b protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 578 FRGVKKKTLSQRIGHHK 628
           FRG+K K LS  IGHH+
Sbjct: 274 FRGIKIKDLSGHIGHHQ 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,015,853
Number of Sequences: 27780
Number of extensions: 296735
Number of successful extensions: 642
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)