Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h14r
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    30   0.020
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    30   0.020
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   3.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   7.1  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   7.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.4  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   9.4  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 30.3 bits (65), Expect = 0.020
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +2

Query: 107 ILKRF*CLHIYQTIIPKKSCVKQ--SNQIYKNKLKTIHKEQKYFYGILKNKI 256
           IL  F    I Q I PK+    Q   N++Y N +K +H++Q+   G+++N I
Sbjct: 313 ILSAFDMARIIQ-ITPKRIQYAQHKENELYANLMKIVHEKQQEITGLIQNII 363


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 30.3 bits (65), Expect = 0.020
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +2

Query: 107 ILKRF*CLHIYQTIIPKKSCVKQ--SNQIYKNKLKTIHKEQKYFYGILKNKI 256
           IL  F    I Q I PK+    Q   N++Y N +K +H++Q+   G+++N I
Sbjct: 351 ILSAFDMARIIQ-ITPKRIQYAQHKENELYANLMKIVHEKQQEITGLIQNII 401


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 594 FFTPLNVSFNALPITSNVTA 535
           FFT  N   + LP+ SN+TA
Sbjct: 343 FFTTSNGFRSTLPVVSNLTA 362


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 594 FFTPLNVSFNALPITSNVTA 535
           FFT  N   + LP+ SN+TA
Sbjct: 312 FFTTSNGFRSTLPVVSNLTA 331


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 594 FFTPLNVSFNALPITSNVTA 535
           FFT  N   + LP+ SN+TA
Sbjct: 363 FFTTSNGFRSTLPVVSNLTA 382


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 594 FFTPLNVSFNALPITSNVTA 535
           FFT  N   + LP+ SN+TA
Sbjct: 312 FFTTSNGFRSTLPVVSNLTA 331


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 287 GTFHHLSSHIRFCFL 243
           G  HHL+ H   CFL
Sbjct: 368 GWIHHLARHAVACFL 382


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -2

Query: 221 VPCVLFLVCFCRFGYFV*RMIFSVLLFDKCEGT 123
           VPC++ L  +CR   +  + + S+    K   T
Sbjct: 203 VPCIVMLGIYCRLYCYAQKHVKSIRAVTKLPDT 235


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 152 VLLFDKCEGTKSV 114
           V LFDKC G  S+
Sbjct: 16  VFLFDKCSGYPSI 28


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 595 LLYSSECLFQCIANH**RYRDRISKINLA 509
           ++YS   + Q +A H    R++  K+N+A
Sbjct: 232 IIYSYWFIIQAVAAHEKNMREQAKKMNVA 260


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 434 NNILATLFWHRQYCRYSE 381
           +N+LA   W+ QY R  +
Sbjct: 63  SNVLAAKVWNGQYARVQQ 80


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 753 DSKCA*CEFLFFIIFDSNKRYSVNSFSIMFLVKKL 649
           + KC   E L ++IF S   + +  F ++F   K+
Sbjct: 195 EDKCPFTEHLGYLIFSSTISFYLPLFVMVFTYYKI 229


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 595 LLYSSECLFQCIANH**RYRDRISKINLA 509
           ++YS   + Q +A H    R++  K+N+A
Sbjct: 108 IIYSYWFIIQAVAAHEKNMREQAKKMNVA 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,402
Number of Sequences: 438
Number of extensions: 4090
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)