Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h14f
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    39   5e-04
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    30   0.31 
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    27   2.2  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    27   2.2  
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    26   5.0  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    25   8.8  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    25   8.8  

>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
 Frame = +3

Query: 339 WGRQDATVAELFTRRAKRNPDAPCFIVVGDRT-------WTFGQIASKSNQVARTMQEHL 497
           W      + ++F   A + PD  C +V    T       +T+ QI   SN +A  + ++ 
Sbjct: 274 WSGYRGAIQDIFASNAAKFPDRECIVVTPSVTIDAPVTSYTYRQIDESSNILAHHLVKN- 332

Query: 498 QLKRGDVVCVFLPNSGEYIWTWLGIAKVGXVSALIN 605
            ++RGDVV V+     + +   +G+ K G   ++I+
Sbjct: 333 GIERGDVVMVYAYRGVDLVVAVMGVLKAGATFSVID 368


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = +3

Query: 351  DATVAELFTRRAKRNPDAPC--FIVVGDRTWTFG-QIASKSNQVARTMQEHLQLKRGDVV 521
            +A +  LF + A  +P +    F+   D+   +  +  S+ +  A      + +K+ DVV
Sbjct: 1749 NADIITLFEKEANEHPSSIALHFVYNVDKENIYSYKFFSEYSIKASYWLHSIGIKKNDVV 1808

Query: 522  CVFLPNSGEYIWTWLGIAKVG 584
             VF+  S +Y    LG+ ++G
Sbjct: 1809 AVFIDKSLDYYSLMLGVLRIG 1829


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 233 LCVSLQKAALHYFRHSSTRPQIPMALREWHGKVEAMGTSR 352
           +C+  Q  AL++       P +P     WHG+V ++ TS+
Sbjct: 87  ICLGFQSLALYHGATIERMPNLP-----WHGRVSSVTTSK 121


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 448 RLRRNRTKWRELCKSTCSSNAVTWSAYSCPTAASTS 555
           R RRNR   R+   +T SS+A   + + CPT  S S
Sbjct: 111 RSRRNRKASRKKIPATQSSSADMDTLHVCPTCGSCS 146


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +3

Query: 432 TWTFGQIASKSNQVARTMQEHLQLKRGDV 518
           TW F  +A   + + +  +E L++++GD+
Sbjct: 329 TWLFQLLADHPDVLQKVREEQLRIRKGDI 357


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/50 (24%), Positives = 20/50 (40%)
 Frame = -3

Query: 610 LLLISAETXPTLAMPSHVQMYSPLLGRNTQTTSPRLSCRCSCIVRATWFD 461
           LL++       L++ S  Q    +   +T     +L   C C  + TW D
Sbjct: 131 LLVLQGNISQCLSVASTFQKLHNMYMGSTHLNFKKLVLECECAFQKTWLD 180


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +2

Query: 284 TRPQIPMALREW 319
           +RPQ+P+A R+W
Sbjct: 7   SRPQVPLAFRQW 18


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,350,651
Number of Sequences: 5004
Number of extensions: 46664
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)