Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10h14f
(618 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0305 - 14125193-14125421,14125666-14127104 40 0.001
02_05_0403 - 28696043-28696153,28696245-28696347,28696443-286965... 37 0.011
08_01_0214 - 1710317-1710443,1710839-1711047,1711161-1711420,171... 35 0.059
03_01_0369 - 2863159-2863491,2864149-2864214,2865045-2865140,286... 34 0.10
04_04_1568 - 34475707-34476822,34476894-34477083,34477330-344774... 33 0.14
03_02_0122 - 5742530-5743705 30 1.7
02_02_0310 - 8842286-8843314 30 1.7
01_06_0997 + 33676441-33676758,33678223-33678314,33678443-336785... 29 2.2
08_01_0900 + 8867895-8868938,8869887-8870085,8871500-8871713,887... 29 3.0
04_04_1076 - 30639835-30640898,30641613-30641915,30642008-306420... 29 3.0
12_01_0513 + 4059586-4059620,4060155-4060365,4060470-4060724,406... 29 3.9
04_03_0824 + 20086639-20087263,20087282-20087463,20087569-200877... 29 3.9
09_06_0236 - 21781508-21783043,21783307-21783504 28 5.2
08_01_0160 - 1277663-1277672,1277733-1277806,1278032-1278088,127... 28 6.8
05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830 28 6.8
02_02_0668 + 12776945-12777478,12777801-12777824,12777863-12777913 28 6.8
07_03_0758 - 21292205-21293329 27 9.0
07_01_0026 + 190568-190829,192475-194534,194620-195168 27 9.0
04_04_0476 - 25508952-25509004,25509245-25509326,25509453-255096... 27 9.0
>04_03_0305 - 14125193-14125421,14125666-14127104
Length = 555
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Frame = +3
Query: 357 TVAELFTRRAKRNPDAPCFI--VVGDRTWTFGQIASKSNQVARTMQEHLQLKRGDVVCVF 530
TV E A+ D + G R++T+G++A + + AR ++ + +++G VV V
Sbjct: 34 TVPEFVLDGAEAYADRVALVEAAAGGRSYTYGEVARDTARFARALRS-VGVRKGHVVVVA 92
Query: 531 LPNSGEYIWTWLGIAKVGXVSALIN 605
LPN Y LGI G V + +N
Sbjct: 93 LPNLAVYPVVSLGIMSAGAVFSGVN 117
>02_05_0403 -
28696043-28696153,28696245-28696347,28696443-28696510,
28696582-28696727,28698038-28699124
Length = 504
Score = 37.1 bits (82), Expect = 0.011
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 381 RAKRNPDAPCFIVVG-DRTWTFGQIASKSNQVARTMQEHLQLKRGDVVCVFLPNSGEYIW 557
RA PDAPC I RT+TF + + A + L + GD V V L N E+
Sbjct: 50 RAAELPDAPCLIAAATGRTYTFAETRLLCRRAAAAL-HRLGVGHGDRVMVLLQNCVEFAV 108
Query: 558 TWLGIAKVGXVSALIN 605
+ + +G V+ N
Sbjct: 109 AFFAASFLGAVTTAAN 124
>08_01_0214 -
1710317-1710443,1710839-1711047,1711161-1711420,
1711442-1711534,1711745-1711872,1711958-1712151,
1712288-1712385,1712548-1712658,1712782-1712950,
1713109-1713181,1713311-1713507
Length = 552
Score = 34.7 bits (76), Expect = 0.059
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = +3
Query: 417 VVGDRTWTFGQIASKSNQVARTMQEHLQLKRGDVVCVFLPNSGEYIWTWLGIAKVGXVSA 596
V G+R T +A + ++A + +L ++RG VV V NS EYI +L + +G + A
Sbjct: 26 VSGNRRLTGAGLADGARRLAAALS-NLGVRRGHVVAVVAFNSIEYIELFLAVTYIGGIIA 84
Query: 597 LIN 605
+N
Sbjct: 85 PLN 87
>03_01_0369 -
2863159-2863491,2864149-2864214,2865045-2865140,
2865530-2865632,2865771-2865838,2866570-2866712,
2867050-2867242,2867602-2867640,2867742-2867807,
2868617-2869651
Length = 713
Score = 33.9 bits (74), Expect = 0.10
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Frame = +3
Query: 357 TVAELFTRRAKRNPDAPCFI--VVGDRTWTFGQIASKSNQVARTMQEHLQLKRGDVVCVF 530
++ +L RRA P A G R TF ++ S A + ++ GD V +
Sbjct: 33 SLTDLLLRRADACPSAVALADAAAGGRALTFAELRSAVLSTAVALSSRAGVRPGDAVLLL 92
Query: 531 LPNSGEYIWTWLGIAKVGXVSALIN 605
PN Y + + +G V +N
Sbjct: 93 APNCVLYPVCFFAVTALGAVGTTVN 117
>04_04_1568 -
34475707-34476822,34476894-34477083,34477330-34477464,
34477571-34477668,34477789-34477979,34478784-34479286,
34480169-34481568,34481655-34481855
Length = 1277
Score = 33.5 bits (73), Expect = 0.14
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +3
Query: 399 DAPCFIVVGDRTWTFGQIASKSNQVARTMQEHLQLKRGDVVCVFLPNSGEYIWTWLGIAK 578
D P +V D +T+ Q + ++A + L + RGDVV V LPN +
Sbjct: 29 DCPS-VVYHDTVFTWSQTHRRCLRLASALVSSLGISRGDVVSVLLPNVPAMYEMHFAVPM 87
Query: 579 VGXVSALINSNL 614
G V IN+ L
Sbjct: 88 SGAVLNSINTRL 99
>03_02_0122 - 5742530-5743705
Length = 391
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2
Query: 233 GRYREDSEYCSFRKRTQHGGHRGGNCHQSHERCQQRVHAVAG 108
GRY E+ EY RK+ GG+ GG + + ++ A AG
Sbjct: 202 GRYEEEDEY---RKKPSGGGYGGGRYEEEEDDYMKKPSAGAG 240
>02_02_0310 - 8842286-8843314
Length = 342
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 209 YCSFRKRTQHGGHRGGNCHQSHERCQQRVHAVAGE*PSR 93
+C +R +HGGHR G E QQ V + E +R
Sbjct: 99 HCRYRHHMRHGGHRHGEGFHGKEEKQQLVFEMPVEPATR 137
>01_06_0997 +
33676441-33676758,33678223-33678314,33678443-33678540,
33678824-33678979,33679106-33679731,33679826-33679896,
33679987-33680241,33680337-33680454,33680595-33680766,
33680854-33681395
Length = 815
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +1
Query: 367 NCSRDVLNGIPMR-HVLLLLEIERGPLDRL 453
NCSR+ LNG + V+L +E+ GP+ R+
Sbjct: 454 NCSREALNGTSINGKVVLCIELTFGPIGRI 483
>08_01_0900 +
8867895-8868938,8869887-8870085,8871500-8871713,
8871854-8871959,8872077-8872199
Length = 561
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 438 TFGQIASKSNQVARTMQEH-LQLKRGDVVCVFLPNSGEYIWTWLGIAKVGXVSALIN 605
T+ + S ++A ++ L L+RG VV L NS E++ ++ ++VG N
Sbjct: 63 TYADVDRLSRRLAAALRRAPLGLRRGGVVMSLLRNSPEFVLSFFAASRVGAAVTTAN 119
>04_04_1076 -
30639835-30640898,30641613-30641915,30642008-30642068,
30643076-30644380
Length = 910
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -2
Query: 188 TQHGGHRGGNCHQSHERCQQRVHAVAG--E*PSRARPSTSNTVGARS 54
++ RG H ERC+QR H + P R PS S+ +RS
Sbjct: 547 SERSAWRGSGAHTHGERCEQRRHTGENIDDMPKRPPPSESHHGSSRS 593
>12_01_0513 +
4059586-4059620,4060155-4060365,4060470-4060724,
4060801-4060865,4061120-4061194,4061440-4061575,
4061661-4061753,4061838-4061983,4062074-4062174,
4062259-4062434,4063823-4063900,4063991-4064199,
4064286-4064378,4064888-4064971,4065405-4065506,
4065591-4065678,4065756-4065809,4065869-4066075,
4066970-4067026,4067171-4067225,4067737-4067813,
4067941-4068007,4068383-4068444,4068541-4068603,
4068702-4068830
Length = 905
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 287 SWKSDENNVELLSVTIHTGRYREDSEYCSFRKRT 186
S+ S+E++VEL V I TG+ EY R +T
Sbjct: 622 SFFSEESHVELFDVEIETGKISNPKEYQLGRSKT 655
>04_03_0824 +
20086639-20087263,20087282-20087463,20087569-20087724,
20087867-20087989,20088079-20088247,20088384-20088466,
20088641-20088742,20089246-20089359,20089735-20089811,
20089884-20089962,20090060-20090128,20090235-20090410,
20090460-20090561,20090678-20090768,20090878-20090976,
20091141-20091326
Length = 810
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/59 (25%), Positives = 32/59 (54%)
Frame = +3
Query: 426 DRTWTFGQIASKSNQVARTMQEHLQLKRGDVVCVFLPNSGEYIWTWLGIAKVGXVSALI 602
D T+ ++ +K Q+A ++ + + +GD V ++LP E L A++G V +++
Sbjct: 307 DAKLTYSELLNKVCQLANYLKS-VGVGKGDAVVIYLPMLMELPIAMLACARIGAVHSVV 364
>09_06_0236 - 21781508-21783043,21783307-21783504
Length = 577
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +3
Query: 414 IVVGDRTWTFGQIASKSNQVARTMQEHLQLKRGDVVCVFLPNSGEYIWTWLGIAKVGXVS 593
+V G ++T+ Q + ++A +Q L + + DVV V PN+ + G V
Sbjct: 33 VVYGATSFTWRQTHHRCLRLAAALQS-LAVSKNDVVSVIAPNTPALYEMHFAVPMAGAVL 91
Query: 594 ALINSNL 614
IN+ L
Sbjct: 92 NAINTRL 98
>08_01_0160 -
1277663-1277672,1277733-1277806,1278032-1278088,
1278111-1278118,1279013-1279080,1279274-1279315,
1279720-1279881,1280903-1281117
Length = 211
Score = 27.9 bits (59), Expect = 6.8
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Frame = +3
Query: 387 KRNPDAPCF-----IVVGDRTWTFGQIASKSNQVARTMQEHLQLKRGD-VVCVFL-PNSG 545
+R + CF +V GD W + A++S + ++ ++L D VVC + P+ G
Sbjct: 46 RRGGETGCFAAWNELVTGDLDW---RAAARSVVPSDSVFPEVELAEDDAVVCSRVTPDGG 102
Query: 546 EYIWTWLGIAKVGXVSALINSNLR 617
+ W I + G VSA NLR
Sbjct: 103 GEVVAWCKIRRGGDVSAATIWNLR 126
>05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830
Length = 763
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = -2
Query: 236 TGRYREDSEYCSFRKRTQHGGHRGGNCHQSHERCQQRVH 120
+GR+R+ E ++ ++ G+ GGN HQS +C Q +H
Sbjct: 130 SGRFRQWPE-----RQWENSGYLGGNHHQSTCQCAQCLH 163
>02_02_0668 + 12776945-12777478,12777801-12777824,12777863-12777913
Length = 202
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 424 EIERGPLDRLRRNRTKWRELCKSTCSSNAV 513
E++ G LDR R R C+STCS++AV
Sbjct: 71 EVDPGVLDRRRCAPKLVRLPCRSTCSTSAV 100
>07_03_0758 - 21292205-21293329
Length = 374
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +3
Query: 231 PCVYRYRKQLYIIFVTLPRDLKFLWRYANGMVRSKRWGRQDATVAEL 371
PC+ RY Q + VT R + W Y N V + R DAT +L
Sbjct: 128 PCILRYSDQDILANVTDNRGMFVAWNYNN--VSTGRMAVFDATSGQL 172
>07_01_0026 + 190568-190829,192475-194534,194620-195168
Length = 956
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 422 NNNKTWRIGIPFSTSREQF 366
NN K RIG+P+ T+ +QF
Sbjct: 466 NNGKALRIGVPYRTTYKQF 484
>04_04_0476 -
25508952-25509004,25509245-25509326,25509453-25509611,
25509702-25509767,25509898-25510067,25510172-25510262,
25510331-25510410,25510887-25511003,25511092-25511218,
25511685-25511865,25511978-25512366,25512959-25513135,
25513306-25513500,25513844-25514031,25514192-25514500,
25514592-25514637
Length = 809
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/58 (22%), Positives = 27/58 (46%)
Frame = +3
Query: 231 PCVYRYRKQLYIIFVTLPRDLKFLWRYANGMVRSKRWGRQDATVAELFTRRAKRNPDA 404
P + ++Q ++ TL F + G+V +K D + E +++A+ P+A
Sbjct: 357 PILQIKKRQTFVFSATLALSANFRKKLKRGLVTAKASASTDLSSIEALSKQARMKPNA 414
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,460,037
Number of Sequences: 37544
Number of extensions: 347717
Number of successful extensions: 1083
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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