Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h14f
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33495| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   4e-12
SB_43771| Best HMM Match : AMP-binding (HMM E-Value=0.041)             43   2e-04
SB_7991| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.080
SB_30263| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.43 
SB_51101| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.75 
SB_5347| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.75 
SB_1852| Best HMM Match : WD40 (HMM E-Value=1.7)                       30   1.3  
SB_28869| Best HMM Match : AMP-binding (HMM E-Value=0)                 30   1.7  
SB_23066| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_6378| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)                 28   5.3  
SB_3214| Best HMM Match : Keratin_B2 (HMM E-Value=0.096)               28   5.3  
SB_49350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_14893| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_56874| Best HMM Match : RVT_1 (HMM E-Value=4.5e-38)                 28   7.0  

>SB_33495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 609

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 33/97 (34%), Positives = 58/97 (59%)
 Frame = +3

Query: 324 VRSKRWGRQDATVAELFTRRAKRNPDAPCFIVVGDRTWTFGQIASKSNQVARTMQEHLQL 503
           ++ + +  ++  +A+LF   A   P+ P F+  G ++WTF +    +N++A   +     
Sbjct: 74  LKCRYYNYKNVIMADLFESTAASLPNKPAFVFEG-KSWTFKEADEFANRIANYFKSQGYA 132

Query: 504 KRGDVVCVFLPNSGEYIWTWLGIAKVGXVSALINSNL 614
           K GDV+ + L N  E+I  WLG++K+G +SALIN+NL
Sbjct: 133 K-GDVIALILENRPEFILIWLGLSKIGVISALINTNL 168


>SB_43771| Best HMM Match : AMP-binding (HMM E-Value=0.041)
          Length = 339

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 23/84 (27%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
 Frame = +3

Query: 357 TVAELFTRRAKRNPDAPCFIVVGDRTW-TFGQIASKSNQVARTMQEHLQLKRGDVVCVFL 533
           TV +   + A+R P+   ++   D+   TF ++  +++Q+A ++   L +KRGD V ++ 
Sbjct: 50  TVGQRLDKVAERFPNREAYVCYEDKERATFAELREEADQLAASLLS-LGIKRGDRVGIWG 108

Query: 534 PNSGEYIWTWLGIAKVGXVSALIN 605
           PN  E++ +  G A++G +   +N
Sbjct: 109 PNMREWVISQFGTARIGVILVNVN 132


>SB_7991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 34.3 bits (75), Expect = 0.080
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = +3

Query: 429 RTWTFGQIASKSNQVARTMQEHLQLKRGDVVCVFLPNSGEYIWTWLGIAKVGXVSALINS 608
           +T TF Q   +S+ +A  + E L L+RGD     LP   EY+   + + ++G  + +I  
Sbjct: 50  KTITFKQYQQRSHALAARLLE-LGLRRGDAAISMLPGDIEYMVVNMALNRIGVNAVIIEP 108

Query: 609 N 611
           N
Sbjct: 109 N 109


>SB_30263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 976

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 14/52 (26%), Positives = 31/52 (59%)
 Frame = +3

Query: 447 QIASKSNQVARTMQEHLQLKRGDVVCVFLPNSGEYIWTWLGIAKVGXVSALI 602
           Q+    N++A  ++ H  +K+GD+VC+++P S   +   L  A++G   +++
Sbjct: 123 QLYGMVNRMANMLKCH-GVKKGDIVCLYMPVSPLAVAAMLACARIGAPHSVV 173


>SB_51101| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = +3

Query: 429 RTWTFGQIASKSNQVARTMQEHLQLKRGDVVCVFLPNSGEYIWTWLGIAKVGXV 590
           ++ TF +   +S  +A  + E L + RGD+V V LP+  E+    + + ++G +
Sbjct: 33  KSLTFKEYKDQSQAIAARLLE-LGVVRGDMVLVMLPSEFEFAIVEIALGRIGAI 85


>SB_5347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = +3

Query: 417 VVGD-RTWTFGQIASKSNQVARTMQEHLQLKRGDVVCVFLPNSGEYIWTWLGIAKVGXVS 593
           V GD +  T+G++  +  + A  + E   +K+GD V +++P   E +   L  A++G V 
Sbjct: 226 VPGDTKQITYGELLKQVCKFANVL-ESKGVKKGDRVAIYMPMIMELVIAMLACARLGAVH 284

Query: 594 ALINS 608
           +++ +
Sbjct: 285 SIVET 289


>SB_1852| Best HMM Match : WD40 (HMM E-Value=1.7)
          Length = 513

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
 Frame = +3

Query: 357 TVAELFTRRAKRNPDAPCFIVVGD----RTWTFGQIASKSNQVARTMQEHLQLKRGDVVC 524
           T+ +L    A + P+    I   +    ++ TF +   +S  +A  + E L L+RG +V 
Sbjct: 291 TLFQLLDHHASKFPNKEAIIYRDENNNRKSLTFQEYRDQSRVLAAKLTE-LGLRRGHLVL 349

Query: 525 VFLPNSGEYIWTWLGIAKVGXV 590
             LP+  E+    + + ++G V
Sbjct: 350 ALLPSEMEFAIVQMALGRIGAV 371


>SB_28869| Best HMM Match : AMP-binding (HMM E-Value=0)
          Length = 561

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
 Frame = +3

Query: 357 TVAELFTRRAKRNPDAPCFIVVGDRTW-------TFGQIASKSNQVARTMQEHLQLKRGD 515
           T+ +L   +A   PD    IV  D T        TF Q   +S  +A  + E L L RGD
Sbjct: 16  TLFQLLDEQAALRPDKEA-IVYRDETGYNHRKSITFKQYQEQSQCLAIMLLE-LGLGRGD 73

Query: 516 VVCVFLPNSGEYIWTWLGIAKVGXVSALI 602
            V + L  S E+I   + + ++G V+ ++
Sbjct: 74  EVLLMLETSIEFIVFHMALNRIGAVALIV 102


>SB_23066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 898

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 487 CIVRATWFDFDAICPKVHVRSPTTIKHGA 401
           C++  TW      C +V  R P T KHG+
Sbjct: 693 CLIDGTWSGKQPSCERVICRDPGTPKHGS 721


>SB_6378| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)
          Length = 269

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 344 TSRCNCSGIVHATC*TESRCAMFYCCWRSNVDLWTDCVEIE 466
           +SR +C G    +C    RC     C+  + DL +DC E E
Sbjct: 163 SSRADCGGPFEQSC-CGHRCVFGKSCYGRSCDLTSDCSEGE 202


>SB_3214| Best HMM Match : Keratin_B2 (HMM E-Value=0.096)
          Length = 191

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 344 TSRCNCSGIVHATC*TESRCAMFYCCWRSNVDLWTDCVEIE 466
           +SR +C G    +C    RC     C+  + DL +DC E E
Sbjct: 85  SSRADCGGPFEQSC-CGHRCVFGKSCYGRSCDLTSDCSEGE 124


>SB_49350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 998

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +3

Query: 483 MQEHLQLKRGDVVC-VFLPNSGEYIWTWLGIAKV 581
           ++ H QL   D+V    LP+  EY W W    K+
Sbjct: 778 LRSHYQLLNNDIVANPVLPSPSEYGWKWQDAEKI 811


>SB_14893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 735

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -3

Query: 433 VRSPTTIKHGASGFRLARRVNNSATVAS*RPHRFDLTMPFA*RHRNLRS 287
           V SP   KH +S  R  R+ ++S   +S R      T PF  R  + RS
Sbjct: 275 VYSPVLTKHDSSERRSQRQCSSSTFTSSLRSSTSSATTPFKLRRNSSRS 323


>SB_56874| Best HMM Match : RVT_1 (HMM E-Value=4.5e-38)
          Length = 492

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 436 GPLDRLRRNRTKWRELCKSTC 498
           G L+RL +NR  WREL    C
Sbjct: 464 GQLERLAQNRDAWRELVGGLC 484


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,913,595
Number of Sequences: 59808
Number of extensions: 399648
Number of successful extensions: 1195
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)