Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h13r
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0099 - 41076056-41076059,41076135-41076175,41076937-410770...    28   5.2  
05_07_0168 + 28122429-28122650,28122651-28122725,28123066-281231...    28   6.9  
02_05_0336 + 28033315-28033365,28033580-28033585,28033798-280338...    28   6.9  
07_03_0003 - 12238606-12239336,12239550-12239804,12239886-122399...    27   9.1  

>01_07_0099 -
           41076056-41076059,41076135-41076175,41076937-41077041,
           41077476-41077552,41078773-41078944,41079099-41079194,
           41080268-41080465
          Length = 230

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = -3

Query: 403 SDTEVNPDGFSFGYETDNGISAQSSGSLKKV 311
           S T+V P  FS G  T NG SAQ  G+ +KV
Sbjct: 77  SGTQVLPRWFSTG--TSNGSSAQQEGATRKV 105


>05_07_0168 +
           28122429-28122650,28122651-28122725,28123066-28123122,
           28123248-28123411,28123672-28123806,28123908-28124010,
           28124165-28124264,28124348-28124556
          Length = 354

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -3

Query: 385 PDGFSFGYETDNGISAQSSGSLKKVDNIDVLAIQGQYEYSAPDGTPVKFTYTAD 224
           P  FSFGY T   +S  S   ++ ++ +D L    Q E     G  + F    D
Sbjct: 201 PFSFSFGYHTYLSVSDISEVRIEGLETLDYLDNLSQRERFTEQGDAITFESEVD 254


>02_05_0336 +
           28033315-28033365,28033580-28033585,28033798-28033884,
           28034741-28034830,28035736-28037778,28037916-28038062,
           28038148-28038560,28038656-28038755
          Length = 978

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = -1

Query: 243 SSRIQLTRTDTNHRVSYFQLLLQCLKPSVALLTTFSLTH 127
           +S  Q ++++ +H  S  Q+  +C +PS+A +  +S+TH
Sbjct: 852 TSEFQQSKSNRDHHNSR-QVDRECTQPSIASMANYSVTH 889


>07_03_0003 -
           12238606-12239336,12239550-12239804,12239886-12239988,
           12240393-12240713,12241427-12241480,12242134-12242274
          Length = 534

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -3

Query: 172 PEAIRRAIDYILAHPPKTETVKKL*IQKIQSTTTPAKEKWTLFRAPYVINI 20
           PEA  R++   +  P KT  +KKL I    +  T A +    F AP V N+
Sbjct: 68  PEAFFRSVKPRVVAPQKTLPIKKLAIPVPPTFKTMADKTLREFAAPSVDNV 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,338,034
Number of Sequences: 37544
Number of extensions: 282486
Number of successful extensions: 782
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)