BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10h13r (621 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_14808| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3 SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07) 29 4.0 SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3 SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3 >SB_14808| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 212 Score = 30.3 bits (65), Expect = 1.3 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = -3 Query: 214 YQPQSELLPVAPPMPEAIRRAIDYILAHPPKTETVKK 104 Y+ QS LP PP P A+ +D++ AH P + T+++ Sbjct: 54 YRHQSSSLPTLPP-PVALIN-LDFVAAHSPHSPTIRR 88 >SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07) Length = 2128 Score = 28.7 bits (61), Expect = 4.0 Identities = 17/56 (30%), Positives = 24/56 (42%) Frame = -3 Query: 433 GSEADAVILRSDTEVNPDGFSFGYETDNGISAQSSGSLKKVDNIDVLAIQGQYEYS 266 G + D D V + + GYE DNG+ +G+ DN G Y+YS Sbjct: 22 GDDVDDAGDEDDNSVGDEDDNVGYEGDNGVGGDDNGAGGDDDN-----SVGDYDYS 72 >SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1141 Score = 28.3 bits (60), Expect = 5.3 Identities = 21/67 (31%), Positives = 30/67 (44%) Frame = -3 Query: 268 SAPDGTPVKFTYTADENGYQPQSELLPVAPPMPEAIRRAIDYILAHPPKTETVKKL*IQK 89 +AP+ T TA E P++ L P A PEA A ++ P+T T L Sbjct: 477 TAPETTTASLVTTAPETTTAPEATLAPEATTAPEA---ATASLVTTAPET-TTASLATTA 532 Query: 88 IQSTTTP 68 ++TT P Sbjct: 533 PETTTAP 539 >SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2839 Score = 27.5 bits (58), Expect = 9.3 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Frame = -3 Query: 427 EADAVILRSDTEVNPDGFSFGYETDN-GISAQSSGSLK 317 E D +++ + T+V + Y TD I QS G LK Sbjct: 1878 EQDVIVMHAQTQVESTPIEYDYNTDEYEIKRQSVGKLK 1915 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,511,444 Number of Sequences: 59808 Number of extensions: 322076 Number of successful extensions: 904 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 734 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 903 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1536271375 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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