BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10h13r (621 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g70620.2 68414.m08137 cyclin-related contains weak similarity... 28 4.3 At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 28 4.3 At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 28 5.7 At4g03460.1 68417.m00473 ankyrin repeat family protein contains ... 27 7.6 At4g01870.1 68417.m00245 tolB protein-related contains weak simi... 27 7.6 >At1g70620.2 68414.m08137 cyclin-related contains weak similarity to Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide I) [Bos taurus] Length = 884 Score = 28.3 bits (60), Expect = 4.3 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = -3 Query: 286 QGQYEYSAPDGTPVKFTYTADENG---YQPQSELLPVAPPMPEA 164 QGQ YS+P P + + A NG + P S P+ PP P+A Sbjct: 78 QGQ-PYSSPAYPPHQPPFNAGANGNSQFPPPSTGAPIPPPYPQA 120 >At1g70620.1 68414.m08138 cyclin-related contains weak similarity to Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide I) [Bos taurus] Length = 897 Score = 28.3 bits (60), Expect = 4.3 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = -3 Query: 286 QGQYEYSAPDGTPVKFTYTADENG---YQPQSELLPVAPPMPEA 164 QGQ YS+P P + + A NG + P S P+ PP P+A Sbjct: 78 QGQ-PYSSPAYPPHQPPFNAGANGNSQFPPPSTGAPIPPPYPQA 120 >At3g19430.1 68416.m02464 late embryogenesis abundant protein-related / LEA protein-related similar to late embryogenesis abundant protein [Picea glauca] GI:1350543 Length = 559 Score = 27.9 bits (59), Expect = 5.7 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = -3 Query: 226 DENGYQPQSELLPVAPPMPEAIRRAIDYILAHPPKTET 113 D+ GY P + + PV+PP P + ++ PP T T Sbjct: 68 DDGGYTPPAPVPPVSPPPPTPSVPSPTPPVSPPPPTPT 105 >At4g03460.1 68417.m00473 ankyrin repeat family protein contains ankyrin repeat domains, Pfam:PF00023 Length = 677 Score = 27.5 bits (58), Expect = 7.6 Identities = 10/18 (55%), Positives = 14/18 (77%) Frame = -2 Query: 122 DRNREKVINPEDSEHNDP 69 D+N+EK+IN ED+ N P Sbjct: 409 DKNKEKLINEEDANGNTP 426 >At4g01870.1 68417.m00245 tolB protein-related contains weak similarity to TolB protein precursor (Swiss-Prot:P44677) [Haemophilus influenzae] Length = 652 Score = 27.5 bits (58), Expect = 7.6 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 7/66 (10%) Frame = -3 Query: 391 VNPDGFSFGYETDNGISAQSSGSLKKVDNI-------DVLAIQGQYEYSAPDGTPVKFTY 233 V+PD GY G S Q + +++I +L I G + S+P+G + Sbjct: 299 VSPDSEFLGYHRFRGESTQGESIVPNIESIVSPIKTLRLLRINGSFPSSSPNGDLIALNS 358 Query: 232 TADENG 215 D NG Sbjct: 359 DFDING 364 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,297,422 Number of Sequences: 28952 Number of extensions: 227825 Number of successful extensions: 620 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 595 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 619 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1255974912 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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