Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h13f
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...   103   1e-24
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    24   1.0  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    24   1.0  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score =  103 bits (248), Expect = 1e-24
 Identities = 51/107 (47%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
 Frame = +3

Query: 189 GSEADAVILRSDTEVNPDG-FSFGYETDNGISAQSSGSLKKVDNIDVLAIQGQYEYSAPD 365
           G++ DAVI     EVN DG +   +ET NGIS Q SG  K+VDN   +  QG   Y+APD
Sbjct: 22  GADKDAVITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVDNETPVVSQGSDSYTAPD 81

Query: 366 GTPVKFTYTADENGYQPQSELLPVAPPMPEAIRRAIDYILAHPPKTE 506
           G  V  TY ADENG+Q Q   +P APP+P  I+RA+++  AHP + +
Sbjct: 82  GQQVSITYVADENGFQVQGSHIPTAPPIPPEIQRALEWNAAHPEEDD 128


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 445 GGATGSNSLCGWYPFSSA 392
           GGA G+ SLC  YP   A
Sbjct: 122 GGAAGATSLCFVYPLDFA 139


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 445 GGATGSNSLCGWYPFSSA 392
           GGA G+ SLC  YP   A
Sbjct: 122 GGAAGATSLCFVYPLDFA 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,553
Number of Sequences: 438
Number of extensions: 3435
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)