Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h12r
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...   170   2e-43
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   6.5  
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...    25   8.6  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   8.6  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    25   8.6  

>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1009

 Score =  170 bits (414), Expect = 2e-43
 Identities = 97/255 (38%), Positives = 141/255 (55%), Gaps = 18/255 (7%)
 Frame = -1

Query: 718  IASGESKWVRSNGLVMLLPHGYDGAASEHSSCRLERFLQL-TDSPESAPDSEAA------ 560
            IA+GE+KW++  G+V+ LPHGYDG   EHSS R+ER+LQL  + P   P  E        
Sbjct: 754  IAAGETKWLQRTGIVLSLPHGYDGQGPEHSSARMERYLQLCNEDPREFPSEEKLQRQHQD 813

Query: 559  C-LHVANPTTPAQYFHLLRRQVVRNYRKPLIIVAPKLLLRLADAVSPLSDFAPRTHFQPV 383
            C +     T P+QYFH LRR + R +RKPL+I   K LLR   A S + +F  +  F+ +
Sbjct: 814  CNIQAIYVTKPSQYFHALRRNIHRQFRKPLVIFFSKSLLRHPAARSTIDEFDEKHGFKLI 873

Query: 382  I-----GDGLADALKVKRVIFVSGKHYYELHKERVRARLEDVAIVRVEALAPFPLPELQM 218
            +     G  +    K++++I  SG+ +  L K R   +++++AI RVE L PF   ++  
Sbjct: 874  LEEEEHGKSILPPEKIEKLIICSGQVWVALSKAREENKIDNIAITRVEQLHPFGWKQMAA 933

Query: 217  QLSKYKNATKFIWSQEEHRNMGAWSFMKPRFENL---CGRKLV--YAGRSEAPTPAVGAS 53
             +S+Y N  + IW QEE  N GAW++M+PR   +    GR L   YAGR  + + A G  
Sbjct: 934  NISQYPNLKEIIWCQEEPLNAGAWTYMEPRIYTILKHLGRDLPVRYAGRPPSASVAAGNK 993

Query: 52   SLHRVEVEHVLKEPL 8
              H  E E  L + L
Sbjct: 994  QQHLAEQEQFLNDAL 1008


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 399  VRGAKSDRGETASAKRSSNFGATIINGFL 485
            V G +SD  E+A+ K++S F     N FL
Sbjct: 1630 VPGLRSDPAESATNKKASEFVILCFNAFL 1658


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 18/90 (20%), Positives = 38/90 (42%)
 Frame = -1

Query: 526 QYFHLLRRQVVRNYRKPLIIVAPKLLLRLADAVSPLSDFAPRTHFQPVIGDGLADALKVK 347
           Q F  L  + V     P+  V  K+++     ++P +    +   Q     G  +   ++
Sbjct: 130 QSFEQLTPRAVAVVVDPIQSVKGKVVIDAFRLINPSTLMMGQEPRQTTSNLGHINKPSIQ 189

Query: 346 RVIFVSGKHYYELHKERVRARLEDVAIVRV 257
            +I   G+HYY L     +  LE++ ++ +
Sbjct: 190 ALIHGLGRHYYSLRINYKKTELEEIMLLNL 219


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/58 (22%), Positives = 26/58 (44%)
 Frame = -1

Query: 691  RSNGLVMLLPHGYDGAASEHSSCRLERFLQLTDSPESAPDSEAACLHVANPTTPAQYF 518
            +SN ++++    YDG    +    +   LQ+     S   SE + + +   TT  +Y+
Sbjct: 1692 KSNAVIVMGTQYYDGKEHRYIDYPISELLQMLGFTASIGSSELSQVILMTVTTKKEYY 1749


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = +2

Query: 293 HALLMQLVVMLTAYKDHPLHFQ----RISQTVTDY 385
           H LL ++V M+   K HP  F+    R+ Q + DY
Sbjct: 601 HVLLEKVVAMMRDLKVHPQRFEILKNRLEQELKDY 635


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,092
Number of Sequences: 5004
Number of extensions: 58398
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)