Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10h12r
(742 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25552| Best HMM Match : Transket_pyr (HMM E-Value=1.6e-05) 168 5e-42
SB_48694| Best HMM Match : No HMM Matches (HMM E-Value=.) 118 7e-27
SB_10097| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_41377| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 31 1.3
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0) 29 5.2
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_25552| Best HMM Match : Transket_pyr (HMM E-Value=1.6e-05)
Length = 405
Score = 168 bits (408), Expect = 5e-42
Identities = 100/229 (43%), Positives = 137/229 (59%), Gaps = 25/229 (10%)
Frame = -1
Query: 718 IASGESKWVRSNGLVMLLPHGYDGAASEHSSCRLERFLQLT-DSPESAPDSEAACLHVAN 542
I+SG+ KWVR GLVMLLPHGY+G EHSS R ERFLQ++ D P+ P V N
Sbjct: 85 ISSGQDKWVRQTGLVMLLPHGYEGLGPEHSSARPERFLQMSNDDPDFFP--------VLN 136
Query: 541 PTTPAQYFHLLRRQVVRNYRKP--------------------LIIVAPKLLLRLADAVSP 422
+TPA FH LRRQ+ ++RKP L+I PK LLRL A S
Sbjct: 137 CSTPASMFHALRRQMAMDFRKPGPRRSHSYLTLVDVLSFCVQLVIFTPKSLLRLEAARSH 196
Query: 421 LSDFAPRTHFQPVIGD-GLA--DALKVKRVIFVSGKHYYELHKERVRARL-EDVAIVRVE 254
+ + A T F+ +I D G A + KV++++ +GK YYEL KER + L ED+AI R+E
Sbjct: 197 VDEMADGTSFRRIIPDEGPASENPEKVRKLLLCTGKIYYELFKERSKRGLTEDIAITRLE 256
Query: 253 ALAPFPLPELQMQLSKYKNATKFIWSQEEHRNMGAWSFMKPRFENLCGR 107
++PFP L+ + KY+NA + +W+QEE +NMG W +++PR E G+
Sbjct: 257 QISPFPFDLLKAEAHKYRNA-EIVWAQEEPKNMGYWGYVRPRLETTVGK 304
>SB_48694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 118 bits (283), Expect = 7e-27
Identities = 58/114 (50%), Positives = 76/114 (66%)
Frame = -1
Query: 496 VRNYRKPLIIVAPKLLLRLADAVSPLSDFAPRTHFQPVIGDGLADALKVKRVIFVSGKHY 317
+RN+RKPLIIVAPKLLLRL A+S L D +P THF PVIGD + +V+RV+F SGKHY
Sbjct: 1 MRNFRKPLIIVAPKLLLRLPAAMSTLHDMSPGTHFMPVIGDTSMNPTEVRRVMFCSGKHY 60
Query: 316 YELHKERVRARLEDVAIVRVEALAPFPLPELQMQLSKYKNATKFIWSQEEHRNM 155
Y L K R + D AI+R+EAL PFP+ ++ ++ +Y A I S + M
Sbjct: 61 YSLLKRREKTGNTDTAIIRLEALTPFPMDAIRDEMRRYPGAQGAIHSGNGYAQM 114
>SB_10097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 31
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = -1
Query: 718 IASGESKWVRSNGLVMLLPHGYDG 647
I+SG+ KWVR GLVMLLPHGY+G
Sbjct: 7 ISSGQDKWVRQTGLVMLLPHGYEG 30
>SB_41377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 331
Score = 31.5 bits (68), Expect = 0.74
Identities = 20/55 (36%), Positives = 24/55 (43%)
Frame = -1
Query: 742 SSNNSGRVIASGESKWVRSNGLVMLLPHGYDGAASEHSSCRLERFLQLTDSPESA 578
S R +S E + N V L P G S R+ERFL LT PES+
Sbjct: 164 SVKKESRNCSSIEERKAIENSTVDLCPEISRGPCSTRPDFRIERFLDLTIKPESS 218
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -1
Query: 310 LHKERVRARLEDVAIVRVEALAPFPLPELQMQLSKYKNATKFIWSQEEHRN 158
+H R++ R I+R AP + +++ KY+N K W + H N
Sbjct: 2682 MHSGRIKTRPNYCVIIRHRQFAPH---QARLRRHKYRNGLKSAWMPKHHNN 2729
>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = +2
Query: 461 SYNYQWLPVVTDNLSPQQVEVLGRGRRVGDVQTRSLRVGRALRTVGQLEESLE 619
S NY+ + VTD L P Q EV + + DV+ + R AL ++G LE SLE
Sbjct: 128 SGNYERVTSVTDLLKPAQEEV-AQTEKETDVE-KGARYKTAL-SIGSLERSLE 177
>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3255
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 62 HRGGWR-LRPSRVHQLSPAKVFEARL-HETPRSHISMLFLTPDKLR 193
H+GG R L P+R +P L H P +HI + L+P + R
Sbjct: 3047 HKGGLRTLSPTRTRAFAPYPPHAQGLSHPMPHTHIGLCTLSPRRTR 3092
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 666 SRTATTAPRQSTPRAGSSDSSS 601
S T T+AP STPR GS+ ++S
Sbjct: 75 STTTTSAPSTSTPRTGSTTTTS 96
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 666 SRTATTAPRQSTPRAGSSDSSS 601
S T T+AP STPR GS+ ++S
Sbjct: 91 STTTTSAPSTSTPRTGSTTTTS 112
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 666 SRTATTAPRQSTPRAGSSDSSS 601
S + T AP STPRAGS+ ++S
Sbjct: 59 SNSTTRAPSTSTPRAGSTTTTS 80
>SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 334 QRSPASLSTHQPNRHRLLAGNECGVRNR 417
QRSPAS P++ R+L N C +R +
Sbjct: 446 QRSPASNKMKDPHKLRVLTLNACSLRGK 473
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,699,548
Number of Sequences: 59808
Number of extensions: 495345
Number of successful extensions: 1518
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1513
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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