Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h12r
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    27   0.14 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   3.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   7.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.0  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.2  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.2  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = -2

Query: 711 PENPSGSAVTGW*CFSRTATTAPRQSTPRAGSSDSS 604
           PE  SG    GW   S  A T+   S P  GSS  S
Sbjct: 57  PEESSGGVELGWFNDSAAAITSTSPSYPGGGSSSPS 92


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 245 CECFHPHNGHVLQPRPHALLMQLVVMLTAYKD 340
           C C  P +  + +       M+L VM++ YKD
Sbjct: 579 CGCGWPQHMLIPKGNKEGFAMELFVMVSDYKD 610


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 349 SLSTHQPNRHRL 384
           SL+THQ  RH+L
Sbjct: 229 SLTTHQQKRHKL 240


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +2

Query: 254 FHPHNGHVLQPRPH 295
           +HPH  H  Q  PH
Sbjct: 316 YHPHQHHPSQYHPH 329


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 15/52 (28%), Positives = 17/52 (32%)
 Frame = +1

Query: 337  RSPASLSTHQPNRHRLLAGNECGVRNRTGARRHRLSGAAISELQLSMASCSY 492
            RS  S ST  P RH     N C    R        S   +S   +    C Y
Sbjct: 1674 RSIRSHSTWDPRRHMYEELNHCAPNRRCPPPPRMGSAEGLSHRGMEDEICPY 1725


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 94  AGRSEAPTPAVGASSLH 44
           A +S+ P+P  GAS  H
Sbjct: 357 AQKSQKPSPVTGASKSH 373


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 243 PSPSRSYRCNSANTKTPR 190
           P P+ S +C++A   TP+
Sbjct: 435 PGPAVSLKCSAAGNPTPQ 452


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 243 PSPSRSYRCNSANTKTPR 190
           P P+ S +C++A   TP+
Sbjct: 435 PGPAVSLKCSAAGNPTPQ 452


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 255 KHSHPSPSRSYRC 217
           +HS P P++ Y C
Sbjct: 397 RHSRPVPAKKYDC 409


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 255 KHSHPSPSRSYRC 217
           +HS P P++ Y C
Sbjct: 397 RHSRPVPAKKYDC 409


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,128
Number of Sequences: 438
Number of extensions: 4112
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)