Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h12f
         (628 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.6  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   1.6  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   1.6  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   2.8  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    23   2.8  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    22   3.7  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    22   4.8  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   4.8  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 626 DSKCVNSYDICPQYILTSSSTKLLIELLPL*PYRRPVST 510
           D+ C   YD+    + +    +L +ELLP+     PV T
Sbjct: 554 DNDCCIRYDVSLSGLGSDRRLELFLELLPMLAPGAPVMT 592


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 242 GVRWIVCTIVFCTIRARESSGIDRRLQMNTRFQR 343
           G R  VC  +FC  R   S  + R L+ +T  +R
Sbjct: 341 GERPFVCNWLFCGKRFTRSDELQRHLRTHTGEKR 374


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 204 TVSFT*YYYNNFYELHQNSTYVSFKNI*NKHFGNAFKCNNNK 79
           T + T   YNN Y  + N  Y+S   + +  FGN  + +  K
Sbjct: 245 TTNSTTNCYNN-YPYYSNMDYLSSSTMSHSQFGNGLETSWGK 285


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 289 RPNGTEHDRTNDP 251
           RP  T+H R N+P
Sbjct: 317 RPRATDHQRRNEP 329


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 493 LDPEETVDTGLLYGYSGNNS 552
           +DP     T L+YGY+G N+
Sbjct: 43  IDPALQFCTHLIYGYAGINA 62


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -3

Query: 368 FLYLFDIMSSGISY 327
           FLY FD+ ++GI++
Sbjct: 142 FLYSFDLFANGITF 155


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 346 IISKRYKNCRAQQLVNAYRTYGH 414
           +I  RY+  +AQ   N Y T  H
Sbjct: 156 MILSRYQRLKAQLWQNRYETVAH 178


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 535 YSGNNSIKSLVDELVKIYCG 594
           Y G N +   VDE   +Y G
Sbjct: 256 YQGKNCVGGKVDETAGVYSG 275


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,475
Number of Sequences: 336
Number of extensions: 3008
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)