Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10h12f
(628 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 43 4e-05
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 29 0.55
SPAC227.04 |||autophagy C terminal domain family protein|Schizos... 28 0.96
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 28 1.3
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 27 2.2
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy... 26 3.9
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 25 6.8
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 6.8
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom... 25 6.8
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 25 9.0
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 9.0
SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces... 25 9.0
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 9.0
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 42.7 bits (96), Expect = 4e-05
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Frame = +1
Query: 373 RAQQLVNAYRTYGHLKATIDNVDYRNESRNIKELHYSRYGL---DPEETVDTG--LLYGY 537
+ Q LV AY++ GH A +D + EL YG D T+ G +L +
Sbjct: 127 KVQLLVRAYQSRGHHLAKLDPLGINVNHNRPSELTLEHYGFTESDLNRTIHLGPGILPNF 186
Query: 538 --SGNNS--IKSLVDELVKIYCGHISYEFTHLES 627
+G + ++ +V+ KIYCG + EFTH+ S
Sbjct: 187 REAGRKTMTLREIVETCEKIYCGSFAVEFTHISS 220
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 29.1 bits (62), Expect = 0.55
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 382 VALGSSYISLILCPLESRIHLQSSVDARRLPRP 284
+ G+S + LC L + H +S+DA LP P
Sbjct: 179 IGFGASLLDKYLCDLRTSYHKHNSLDALPLPTP 211
>SPAC227.04 |||autophagy C terminal domain family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 179
Score = 28.3 bits (60), Expect = 0.96
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = -3
Query: 371 QFLYLFDIMSSGISYSSAIVGRCPKTPAPEWY----RTRSY 261
Q L + S ++Y + +G CP T WY RTR Y
Sbjct: 97 QIFELLEGSSQNLAYDALAIGDCPGTVGIAWYIHPCRTRDY 137
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 448 NESRNIKELHYSRYGLDPEETVDTGLLYGYSGNNSIKSL 564
+ESR E H R+G+ ++ ++ GYS +++IKS+
Sbjct: 138 DESRLRAEQHKRRFGVHSQQPSNSIQTIGYSNSDAIKSI 176
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = +1
Query: 418 KATIDNVDYRNESRNIKELHYSRYGLDPEETVDTGLLYGYSGNNSIKSLVDELVK 582
+A+ N+ +E+ + +LH S++GL E + + + ++K L+ L+K
Sbjct: 246 EASRRNLTSSDETNSFSKLHQSQFGLKEESSHEPRSSQHWKNEVAMKDLLKNLIK 300
>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 26.2 bits (55), Expect = 3.9
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +1
Query: 556 KSLVDELVKIYCGHISYEFTHLE 624
+SLVD ++++Y ++ +FT+LE
Sbjct: 209 ESLVDFIIRLYSVYVDCQFTYLE 231
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 6.8
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 532 GYSGNNSIKSLVDELVK 582
G+S NNS++SLV E+ +
Sbjct: 428 GFSANNSVQSLVSEIFR 444
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 25.4 bits (53), Expect = 6.8
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +1
Query: 415 LKATIDNVDYRNESRNIKELHYSRYGLDPEETVDTGLLYGYSGNNSIKSLVDELVKI 585
LK T+DNVD+ S+ +++L L+ E + T + G ++ S +D ++ I
Sbjct: 135 LKETLDNVDFDARSKILQDLR-----LEYAEILLTKFNFEKKGYQNLSSALDTILHI 186
>SPBC2F12.13 |klp5|sot1|kinesin-like protein
Klp5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 883
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 367 NCRAQQLVNAYRTYGHLKATIDNVDYRNESRNIK 468
NCR +V + H + T + + Y N ++NIK
Sbjct: 358 NCRTVMIVCVSPSSVHYEETHNTLKYANRAKNIK 391
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 464 SKSCIIRGTVSIPKKQWTRVSCM 532
S+ ++R SIPK +W V C+
Sbjct: 287 SRLDLVRNIASIPKSRWKLVCCI 309
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +1
Query: 436 VDYRNESRNIKELHYSRYGL--DPEETVDTGLLYGYSGN 546
+D+ + K H+SRYGL D EE D +GN
Sbjct: 920 IDFNDGKWIFKVQHFSRYGLLDDEEEENDMSSTSNEAGN 958
>SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 563 KLLIELLPL*PYRRPVSTVSSGSRPYLE 480
KL IEL+ + P RR + T+ G + Y+E
Sbjct: 54 KLPIELILVSPMRRALETMKIGFQHYIE 81
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 622 PNA*THTIYARNIF*PVHLLSF*LSCC 542
PNA ++IYARN+F V L L C
Sbjct: 658 PNAGLNSIYARNLFNTVEQLQSVLPNC 684
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,104
Number of Sequences: 5004
Number of extensions: 48901
Number of successful extensions: 149
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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