Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10h12f
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1795 + 29603694-29605208,29605423-29605649,29605739-296060... 42 4e-04
04_03_0741 + 19187333-19188868,19189264-19189490,19189578-191898... 42 4e-04
07_01_0551 - 4105721-4105774,4106090-4106159,4106880-4106945,410... 30 1.7
01_05_0413 + 21935030-21935437,21936844-21937590 29 2.3
03_05_1018 - 29731986-29732011,29732251-29732683 29 3.0
08_02_0444 - 17209447-17209491,17210559-17210849,17211655-172116... 29 4.0
09_04_0385 + 17167174-17167440,17173321-17173962 28 7.0
08_02_1138 + 24631919-24632248,24634100-24634502,24634788-246349... 27 9.2
07_03_0661 - 20423495-20423660,20424403-20424590 27 9.2
02_05_0553 - 29918289-29918361,29918505-29918617,29918694-299188... 27 9.2
>07_03_1795 +
29603694-29605208,29605423-29605649,29605739-29606071,
29606229-29606475,29606948-29607076,29607161-29607376,
29607454-29607577,29608377-29608612
Length = 1008
Score = 41.9 bits (94), Expect = 4e-04
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 10/89 (11%)
Frame = +1
Query: 385 LVNAYRTYGHLKATIDNVDYRNESRNIKE-LHYSRYG-----LDPEETVDTGLLYGYSGN 546
LV AY+ GH+KA +D + R + R + + L S YG LD E + + G+ +
Sbjct: 111 LVRAYQVNGHMKAKLDPL--RLDDRAVPDDLDLSLYGFTEADLDREFFLGVWRMAGFLSD 168
Query: 547 N----SIKSLVDELVKIYCGHISYEFTHL 621
N +++ ++ +L + YCG I YE+ H+
Sbjct: 169 NRPVLTLREILSKLEQAYCGPIGYEYMHI 197
>04_03_0741 +
19187333-19188868,19189264-19189490,19189578-19189899,
19190311-19190399,19190882-19191128,19191756-19191884,
19191967-19192182,19192256-19192379,19192857-19193095
Length = 1042
Score = 41.9 bits (94), Expect = 4e-04
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Frame = +1
Query: 364 KNCRAQQLVNAYRTYGHLKATIDNVDYRNESRNIKEL------HYSRYGLDPEETVDTGL 525
++ R LV AY+ GHLKA +D + E R I ++ +S LD E +
Sbjct: 111 ESMRLLLLVRAYQVSGHLKAKLDPLAL--EERPIPDVLDPAFYGFSEADLDREFFLGVWR 168
Query: 526 LYGYSGNN----SIKSLVDELVKIYCGHISYEFTHL 621
+ G+ N +++S+++ L + YCG I YE+ H+
Sbjct: 169 MAGFLSENRPVQTLRSVLERLEQAYCGTIGYEYMHI 204
>07_01_0551 -
4105721-4105774,4106090-4106159,4106880-4106945,
4106985-4107479,4107491-4107672,4107728-4108222
Length = 453
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Frame = -3
Query: 386 SCCARQFLYLFDIMSSGISYSSAIVGRCPKTPA--------PEWYRTRSY 261
+CC RQF Y+ ++ + SA V C + PEW+ R Y
Sbjct: 384 TCCYRQFCYISSVLYGDLVSGSAKVQTCSRNKGLIFCSESEPEWWAMRKY 433
>01_05_0413 + 21935030-21935437,21936844-21937590
Length = 384
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = +1
Query: 286 GAGVFGHRPTIADEYEIPEDIISKRYKNCRAQQLVNAYRTYGHLKATIDNVDYRNES 456
G G G + D + + ++ + +K+ V TYG K T D ++ NE+
Sbjct: 96 GPGGSGASFVVWDPHALAAGVLPRFFKHANFSSFVRQLNTYGFRKVTPDRWEFANEA 152
>03_05_1018 - 29731986-29732011,29732251-29732683
Length = 152
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +1
Query: 208 LCFSKVRVSRLR-CKVDRLYDRVLY 279
+C K+ SRL C VDRLYD++ +
Sbjct: 101 MCLFKMDFSRLEWCSVDRLYDQIFF 125
>08_02_0444 -
17209447-17209491,17210559-17210849,17211655-17211672,
17211798-17211969,17212523-17212630,17212940-17213382
Length = 358
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 15 SSPRPVTLAHSQI*KTLTNVKLYYC-CI*TRFRNVYFKCF*MIHMYCFGVVRRNCCNNI 188
SS +P + S+ K +T + C C ++ +Y +CF YC G NCCNN+
Sbjct: 151 SSQKPSSEMWSET-KDVTLTRKTNCSCKYSKCLKLYCECFEK-GRYCIGCNCTNCCNNV 207
>09_04_0385 + 17167174-17167440,17173321-17173962
Length = 302
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/40 (27%), Positives = 17/40 (42%)
Frame = +1
Query: 331 EIPEDIISKRYKNCRAQQLVNAYRTYGHLKATIDNVDYRN 450
E D++ +K+C V TYG K D ++ N
Sbjct: 64 EFARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDRWEFAN 103
>08_02_1138 +
24631919-24632248,24634100-24634502,24634788-24634982,
24635384-24635838,24636119-24636349,24636891-24637123,
24637899-24637971
Length = 639
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -2
Query: 510 CFFGIETVPRIMQLFDIPAFISVVYVIYSSL*MSVRTV 397
CFF IETV R ++ + P F + + ++ S + +V V
Sbjct: 253 CFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSNV 290
>07_03_0661 - 20423495-20423660,20424403-20424590
Length = 117
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -3
Query: 584 ILTSSSTKLLIELLPL*PYRR-PVSTVSSGS 495
+L+SSS + I P+ PYRR P S +SGS
Sbjct: 29 LLSSSSGPIPIHPAPVPPYRRIPTSATASGS 59
>02_05_0553 -
29918289-29918361,29918505-29918617,29918694-29918801,
29918991-29919206,29919284-29919559,29919720-29919824,
29919925-29920379,29920746-29920940,29921237-29921639,
29922006-29922518
Length = 818
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -2
Query: 510 CFFGIETVPRIMQLFDIPAFISVVYVIYSSL*MSVRTV 397
CFF IETV R ++ + P F + + ++ S + +V V
Sbjct: 314 CFFAIETVLRPLKAENSPPFTTAMIILASVISSTVSNV 351
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,300,868
Number of Sequences: 37544
Number of extensions: 294629
Number of successful extensions: 624
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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