Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h12f
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58002| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1)                  42   5e-04
SB_3347| Best HMM Match : WD40 (HMM E-Value=0.053)                     28   5.4  
SB_17758| Best HMM Match : Transformer (HMM E-Value=0.35)              28   7.1  

>SB_58002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
 Frame = +1

Query: 277 YHSGAGVFGHRPTIADEYEI---PEDIISKRYKNCRAQQLVNAYRTYGHLKATIDNVDYR 447
           YHS  G +G RP   D+  I    E+ I  +  N    +LV AYR +GH KA +D ++ R
Sbjct: 21  YHSKTGCYGFRPK-PDKTTIRAESEEAIKNQVLNSNLLRLVTAYRKHGHRKADLDPLNMR 79

Query: 448 NESRNIKELHYSRY 489
             + N+  + Y +Y
Sbjct: 80  LHNLNL-IIEYIQY 92


>SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1)
          Length = 311

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = +1

Query: 277 YHSGAGVFGHRPTIADEYEI---PEDIISKRYKNCRAQQLVNAYRTYGHLKATIDNVDYR 447
           YHS  G +G RP   D+  I    E+ I  +  N    +LV AYR +GH KA +D ++ R
Sbjct: 21  YHSKTGCYGFRPK-PDKTTIRAESEEAIKNQVLNSNLLRLVTAYRKHGHRKADLDPLNMR 79

Query: 448 NESRNI 465
             + N+
Sbjct: 80  LHNLNL 85


>SB_3347| Best HMM Match : WD40 (HMM E-Value=0.053)
          Length = 321

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +1

Query: 367 NCRAQQLVNAYRTYGHLKATIDNVDYRNESRNIKELHYSRYGLDPEETVDTGLLYGYSGN 546
           +C    L N Y    HL  T   + + N SRN++  H S+  ++  E    G LY  S +
Sbjct: 30  DCTNGSLKNQYTPSSHLSTTCACLKWCNSSRNVEGGHSSK--VNDVEWSRNGELYSCSSD 87

Query: 547 NSI 555
             I
Sbjct: 88  KYI 90


>SB_17758| Best HMM Match : Transformer (HMM E-Value=0.35)
          Length = 974

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 421 ATIDNVDYRNESRNIKELHYSRYGLDPEETVDTGLLYGYSGNNS 552
           +T +N  Y+  S+ +K      YG    E VD+ + Y  SG NS
Sbjct: 574 STHENSIYKTNSK-LKTFRVLNYGAKSREDVDSKVSYSDSGTNS 616


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,285,434
Number of Sequences: 59808
Number of extensions: 363079
Number of successful extensions: 1094
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)