Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h12f
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78201-4|CAB01590.2|  911|Caenorhabditis elegans Hypothetical pr...    61   7e-10
Z78019-10|CAE46691.1|  911|Caenorhabditis elegans Hypothetical p...    61   7e-10
AF039040-6|AAB94185.2| 1029|Caenorhabditis elegans Hypothetical ...    30   1.6  
U53151-3|AAB37067.2|  388|Caenorhabditis elegans Serpentine rece...    29   3.6  
AC006790-6|AAF60734.1|  299|Caenorhabditis elegans Hypothetical ...    28   6.3  

>Z78201-4|CAB01590.2|  911|Caenorhabditis elegans Hypothetical
           protein ZK836.2 protein.
          Length = 911

 Score = 60.9 bits (141), Expect = 7e-10
 Identities = 39/117 (33%), Positives = 60/117 (51%)
 Frame = +1

Query: 277 YHSGAGVFGHRPTIADEYEIPEDIISKRYKNCRAQQLVNAYRTYGHLKATIDNVDYRNES 456
           Y  G GVFGH P       + E+      +N +   L+NA+R YG+L+A +D +  R + 
Sbjct: 24  YRPGHGVFGHLPD--PPKRVFENQGGLTPENAQRVHLINAFRRYGYLEADLDPLGLR-KV 80

Query: 457 RNIKELHYSRYGLDPEETVDTGLLYGYSGNNSIKSLVDELVKIYCGHISYEFTHLES 627
            ++ EL  + YGL  +E V         GN S+  L ++L  IYCG  + EF H+ +
Sbjct: 81  ESVAELDPAIYGLSLDENV--------KGNFSLHDLAEQLRHIYCGPTAIEFMHINN 129


>Z78019-10|CAE46691.1|  911|Caenorhabditis elegans Hypothetical
           protein ZK836.2 protein.
          Length = 911

 Score = 60.9 bits (141), Expect = 7e-10
 Identities = 39/117 (33%), Positives = 60/117 (51%)
 Frame = +1

Query: 277 YHSGAGVFGHRPTIADEYEIPEDIISKRYKNCRAQQLVNAYRTYGHLKATIDNVDYRNES 456
           Y  G GVFGH P       + E+      +N +   L+NA+R YG+L+A +D +  R + 
Sbjct: 24  YRPGHGVFGHLPD--PPKRVFENQGGLTPENAQRVHLINAFRRYGYLEADLDPLGLR-KV 80

Query: 457 RNIKELHYSRYGLDPEETVDTGLLYGYSGNNSIKSLVDELVKIYCGHISYEFTHLES 627
            ++ EL  + YGL  +E V         GN S+  L ++L  IYCG  + EF H+ +
Sbjct: 81  ESVAELDPAIYGLSLDENV--------KGNFSLHDLAEQLRHIYCGPTAIEFMHINN 129


>AF039040-6|AAB94185.2| 1029|Caenorhabditis elegans Hypothetical
           protein T22B11.5 protein.
          Length = 1029

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
 Frame = +1

Query: 373 RAQQLVNAYRTYGHLKATIDNVDYRNESRNIK---ELHYSRYGL-----DPEETVDTGLL 528
           + Q L+ +Y+T GH  A +D +   +   +     EL  S YGL     D E  +     
Sbjct: 140 KIQLLIRSYQTRGHNIADLDPLGINSADLDDTIPPELELSFYGLGERDLDREFLLPPTTF 199

Query: 529 YGYSGNNSIKSLVDELVKIYCGHISYEFTHLES 627
                + +++ ++  L  IYC     E+ HL +
Sbjct: 200 ISEKKSLTLREILQRLKDIYCTSTGVEYMHLNN 232


>U53151-3|AAB37067.2|  388|Caenorhabditis elegans Serpentine
           receptor, class r protein9 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -2

Query: 468 FDIPAFISVV-YVIYSSL*MSVRTVGVDQLLRSAVLISL*YYVLWNLVFIC 319
           F IP F++++ ++IY+ +   +   G++Q L S + I +    +W +  IC
Sbjct: 139 FSIPWFVAIMSWIIYNFINGKIYYGGIEQNLLSRIFILVTNLYIWYISTIC 189


>AC006790-6|AAF60734.1|  299|Caenorhabditis elegans Hypothetical
           protein Y49F6B.8 protein.
          Length = 299

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -2

Query: 336 NLVFICNRRSMPEDSRARMVQNTIVQTIHLTP*STHSH-FTKTQ-HTVS 196
           +L ++CN   + ED++ R V+   + TI     S H+H F +T  HTVS
Sbjct: 248 DLPYVCNLMIIAEDAKFRNVETCCIATIV----SYHAHDFIRTMIHTVS 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,588,017
Number of Sequences: 27780
Number of extensions: 274404
Number of successful extensions: 699
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)