Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h12f
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55410.1 68416.m06154 2-oxoglutarate dehydrogenase E1 compone...    44   1e-04
At5g65750.1 68418.m08274 2-oxoglutarate dehydrogenase E1 compone...    42   3e-04
At5g54070.1 68418.m06731 heat shock transcription factor family ...    31   0.83 
At2g41690.1 68415.m05150 heat shock transcription factor family ...    29   3.3  
At3g44690.1 68416.m04806 expressed protein                             28   4.4  
At1g79110.1 68414.m09224 expressed protein                             28   4.4  
At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit, ...    28   5.8  
At1g16870.1 68414.m02037 mitochondrial 28S ribosomal protein S29...    28   5.8  
At5g55530.3 68418.m06918 C2 domain-containing protein low simila...    27   7.7  
At5g55530.2 68418.m06917 C2 domain-containing protein low simila...    27   7.7  
At5g55530.1 68418.m06916 C2 domain-containing protein low simila...    27   7.7  
At5g03720.1 68418.m00332 heat shock transcription factor family ...    27   7.7  
At1g76750.1 68414.m08932 hypothetical protein                          27   7.7  
At1g34150.1 68414.m04236 tRNA pseudouridine synthase family prot...    27   7.7  

>At3g55410.1 68416.m06154 2-oxoglutarate dehydrogenase E1 component,
           putative / oxoglutarate decarboxylase, putative /
           alpha-ketoglutaric dehydrogenase, putative similar to
           SP|P20967 2-oxoglutarate dehydrogenase E1 component,
           mitochondrial precursor (EC 1.2.4.2)
           (Alpha-ketoglutarate dehydrogenase) {Saccharomyces
           cerevisiae}; contains Pfam profiles PF02779:
           Transketolase, pyridine binding domain, PF00676:
           Dehydrogenase E1 component
          Length = 1017

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 10/96 (10%)
 Frame = +1

Query: 364 KNCRAQQLVNAYRTYGHLKATIDNVDYRNESRNIKE-LHYSRYG-----LDPEETVDTGL 525
           ++ R   LV AY+  GH+KA +D +    E R I E L  + YG     LD E  +    
Sbjct: 117 ESMRLLLLVRAYQVNGHMKAKLDPLGL--EQREIPEDLDLALYGFTEADLDREFFLGVWQ 174

Query: 526 LYGYSGNN----SIKSLVDELVKIYCGHISYEFTHL 621
           + G+   N    +++S++  L + YCG+I +E+ H+
Sbjct: 175 MSGFMSENRPVQTLRSILTRLEQAYCGNIGFEYMHI 210


>At5g65750.1 68418.m08274 2-oxoglutarate dehydrogenase E1 component,
           putative / oxoglutarate decarboxylase, putative /
           alpha-ketoglutaric dehydrogenase, putative similar to
           SP|P20967 2-oxoglutarate dehydrogenase E1 component,
           mitochondrial precursor (EC 1.2.4.2)
           (Alpha-ketoglutarate dehydrogenase) {Saccharomyces
           cerevisiae}; contains Pfam profiles PF02779:
           Transketolase, pyridine binding domain, PF00676:
           Dehydrogenase E1 component
          Length = 1025

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
 Frame = +1

Query: 364 KNCRAQQLVNAYRTYGHLKATIDNVDYRNESRNIKE-LHYSRYG-----LDPEETVDTGL 525
           ++ R   LV AY+  GH+KA +D +    E R I E L    YG     LD E  +    
Sbjct: 120 ESMRLLLLVRAYQVNGHMKAKLDPLGL--EKREIPEDLTPGLYGFTEADLDREFFLGVWR 177

Query: 526 LYGYSGNN----SIKSLVDELVKIYCGHISYEFTHL 621
           + G+   N    +++S++  L + YCG I YE+ H+
Sbjct: 178 MSGFLSENRPVQTLRSILSRLEQAYCGTIGYEYMHI 213


>At5g54070.1 68418.m06731 heat shock transcription factor family
           protein contains Pfam profile: PF00447 HSF-type
           DNA-binding domain
          Length = 331

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 316 IADEYEIPEDIISKRYKNCRAQQLVNAYRTYGHLKATIDNVDYRNE 453
           I D YE  E+++ K +K+      +    +YG  K   D  ++ NE
Sbjct: 100 IWDSYEFSENLLPKYFKHKNFSSFIRQLNSYGFKKVDSDRWEFANE 145


>At2g41690.1 68415.m05150 heat shock transcription factor family
           protein contains Pfam profile: PF00447 HSF-type
           DNA-binding domain
          Length = 244

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +1

Query: 331 EIPEDIISKRYKNCRAQQLVNAYRTYGHLKATIDNVDYRNE 453
           E   D++   +K+C     V    TYG  K T    ++ NE
Sbjct: 74  EFARDLLPTLFKHCNFSSFVRQLNTYGFRKVTTIRWEFSNE 114


>At3g44690.1 68416.m04806 expressed protein 
          Length = 1176

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 361 YKNCRAQQLVNAYRT--YGHLKATIDNVDYRNESRNIKELHY 480
           Y  C +QQL+N Y T  YG +   ++  D   +  + K L Y
Sbjct: 568 YLQCESQQLLNDYETNSYGIMHPDVNKSDTLEDREDSKGLRY 609


>At1g79110.1 68414.m09224 expressed protein
          Length = 358

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -3

Query: 152 TVHMYHSKTFKINISETRS-NATIIKFDISQGLL-NLRMRESDRAR 21
           ++H+Y  +  K  I E R   A  I   I QGL+  LR++E +R R
Sbjct: 161 SLHLYQMERVKYEIEEKRKRQARTIMEAIEQGLVKRLRVKEEERER 206


>At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit,
           putative similar to gi:2827141 cellulose synthase
           catalytic subunit, Arabidopsis thaliana (Ath-A)
          Length = 1088

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 406 YGHLKATIDNVDYRNESRNIKELHYSRYGLDPEETVDTGLLY 531
           Y  +K +   V+   E  +I +L +  YG+DPE   +  L Y
Sbjct: 88  YKRIKGS-PRVEGDEEDDDIDDLEHEFYGMDPEHVTEAALYY 128


>At1g16870.1 68414.m02037 mitochondrial 28S ribosomal protein
           S29-related contains weak similarity to
           Swiss-Prot:P51398 mitochondrial 28S ribosomal protein
           S29 (MRP-S29, Death-associated protein 3, DAP-3) [Homo
           sapiens]
          Length = 480

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +1

Query: 214 FSKVRVSRLRCKVDRLYDRVLYHSGAGVFGHRPTIADEYEIPED 345
           F++ R+  LRCK+   +D ++   GAGV G+    AD   IPED
Sbjct: 277 FNESRLRELRCKI---HDPIVLGEGAGV-GYLKG-ADAMPIPED 315


>At5g55530.3 68418.m06918 C2 domain-containing protein low
           similarity to cold-regulated gene SRC2 [Glycine max]
           GI:2055230; contains Pfam profile PF00168: C2 domain
          Length = 405

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +1

Query: 355 KRYKNCRAQQLVNAYRTYGHLKATIDNVDYRNESRNIKELHYSRYGLDPEETVDTGLLYG 534
           K  K+C  Q LV A   Y H    I N+   ++     +L  +    DP+++V T ++ G
Sbjct: 39  KDSKSCGRQDLVGALEVYVHQARDIHNICIYHKQDVYAKLCLTS---DPDKSVSTKIING 95

Query: 535 YSGNNSI 555
             G N +
Sbjct: 96  -GGRNPV 101


>At5g55530.2 68418.m06917 C2 domain-containing protein low
           similarity to cold-regulated gene SRC2 [Glycine max]
           GI:2055230; contains Pfam profile PF00168: C2 domain
          Length = 405

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +1

Query: 355 KRYKNCRAQQLVNAYRTYGHLKATIDNVDYRNESRNIKELHYSRYGLDPEETVDTGLLYG 534
           K  K+C  Q LV A   Y H    I N+   ++     +L  +    DP+++V T ++ G
Sbjct: 39  KDSKSCGRQDLVGALEVYVHQARDIHNICIYHKQDVYAKLCLTS---DPDKSVSTKIING 95

Query: 535 YSGNNSI 555
             G N +
Sbjct: 96  -GGRNPV 101


>At5g55530.1 68418.m06916 C2 domain-containing protein low
           similarity to cold-regulated gene SRC2 [Glycine max]
           GI:2055230; contains Pfam profile PF00168: C2 domain
          Length = 405

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +1

Query: 355 KRYKNCRAQQLVNAYRTYGHLKATIDNVDYRNESRNIKELHYSRYGLDPEETVDTGLLYG 534
           K  K+C  Q LV A   Y H    I N+   ++     +L  +    DP+++V T ++ G
Sbjct: 39  KDSKSCGRQDLVGALEVYVHQARDIHNICIYHKQDVYAKLCLTS---DPDKSVSTKIING 95

Query: 535 YSGNNSI 555
             G N +
Sbjct: 96  -GGRNPV 101


>At5g03720.1 68418.m00332 heat shock transcription factor family
           protein contains Pfam profile: PF00447 HSF-type
           DNA-binding domain
          Length = 412

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/55 (25%), Positives = 23/55 (41%)
 Frame = +1

Query: 292 GVFGHRPTIADEYEIPEDIISKRYKNCRAQQLVNAYRTYGHLKATIDNVDYRNES 456
           G+ G    + D  E    I+ + +K+      V    TYG  K   D  ++ NE+
Sbjct: 76  GLTGASFVVWDPLEFARIILPRNFKHNNFSSFVRQLNTYGFRKIDTDKWEFANEA 130


>At1g76750.1 68414.m08932 hypothetical protein
          Length = 158

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = -1

Query: 316 SSVDARRLPRPNGTEHDRTNDPPYTLVYSLALY*NTAYCLFHLILLQ 176
           S+V AR L +P+      T+ P  +LVY L L  +T YC   L+ LQ
Sbjct: 23  STVTARPLMKPSMG----TSSPTTSLVYRLKLDEDTGYCWDSLMQLQ 65


>At1g34150.1 68414.m04236 tRNA pseudouridine synthase family protein
           similar to pseudouridine synthase 3 [Mus musculus]
           GI:9652099; contains Pfam profile PF01416: tRNA
           pseudouridine synthase
          Length = 446

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 226 RVSRLRCK-VDRLYDRVLYHSGAGVFGHRPTIADEYEIPEDIISKRY 363
           +VS  +C+ ++  +DR L  S + V   R    D+  IP  +ISKRY
Sbjct: 45  QVSSCQCQQMEVKHDRSLSDSSSLVRRRRVRKGDKNSIPSHLISKRY 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,511,828
Number of Sequences: 28952
Number of extensions: 245278
Number of successful extensions: 633
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)