Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h11r
         (757 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     23   3.5  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    22   4.6  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   8.0  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.0  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 187 IAASHRRKRGFSGQNTSRQGNPYQNG 110
           +AASH +++    Q       PY+NG
Sbjct: 51  LAASHLQQQQLKKQRLDNGDYPYENG 76


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 344 LLTPLALTTAFKASSLL*AFLSEI 415
           LLT LA +   K SSLL  F + I
Sbjct: 63  LLTDLATSILLKVSSLLIGFCASI 86


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +1

Query: 19  GDMFGAALRICQMNVMSTRH*HDKKIPTVLL 111
           G ++GA +    MNV +  H   +  P  +L
Sbjct: 10  GQLYGAQIPAMSMNVKAAEHPSLRGTPLAML 40


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 131 LTACILSAEPPLSSVARSNKVGGEFLE 211
           LT CI      L  ++RSNK    FL+
Sbjct: 200 LTNCICFVPGVLGLLSRSNKESQRFLK 226


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 131 LTACILSAEPPLSSVARSNKVGGEFLE 211
           LT CI      L  ++RSNK    FL+
Sbjct: 200 LTNCICFVPGVLGLLSRSNKESQRFLK 226


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 131 LTACILSAEPPLSSVARSNKVGGEFLE 211
           LT CI      L  ++RSNK    FL+
Sbjct: 200 LTNCICFVPGVLGLLSRSNKESQRFLK 226


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 131 LTACILSAEPPLSSVARSNKVGGEFLE 211
           LT CI      L  ++RSNK    FL+
Sbjct: 200 LTNCICFVPGVLGLLSRSNKESQRFLK 226


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,139
Number of Sequences: 336
Number of extensions: 4265
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)