Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10h11r
(757 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.17c |urg2||uracil phosphoribosyltransferase |Schizosacc... 28 1.3
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.2
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 27 2.9
SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.9
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 5.0
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 26 6.7
SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc... 26 6.7
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 26 6.7
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos... 25 8.8
>SPAC1002.17c |urg2||uracil phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -2
Query: 237 PKEYYYELFSRNSPPTLLLRATEERGGSADRIQAVKEILTKMEENCGNFLIVSV 76
P EYY +L +++ ++L GG+A+ + I T E C N + VSV
Sbjct: 92 PIEYYNKLPKKSTDTAVILDPVMATGGTANAV-----ITTLQEWGCKNIIFVSV 140
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 27.5 bits (58), Expect = 2.2
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Frame = +3
Query: 51 SDERHVHPSLTR*ENSHSSPPF-----W*GFP*RLV----FCPLNPLFLRWLAAIKWEES 203
S++ +H S T+ ++HSSP F + G P R+V F +P R L A +W+E
Sbjct: 466 SNQASIHASFTKESSTHSSPSFTLESLFSGAP-RVVELTRFSQPSPACSRALLA-RWKEE 523
Query: 204 FSRTIH 221
+ +IH
Sbjct: 524 YRTSIH 529
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 366 VKARGVNREQAEIILSRNLIEIGDD 292
+KARG REQ IL+R I G D
Sbjct: 418 LKARGATREQITEILNRQAIAAGTD 442
>SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = -2
Query: 393 SKEEALKAVVKARGVNREQAEIILSRNLI 307
SK ++K + +ARG++ +QAE LS+N++
Sbjct: 3 SKLLSMKFMQRARGIDPKQAEEELSKNIV 31
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -2
Query: 420 KQISERKAYSKEEALKAVVKARGVNREQAEIILSRNLIEIGDDRFVLSWDNRLKLLAP 247
+ +SE + E + K + E+ I+L+ NLI + V S +NRL L P
Sbjct: 1306 ESLSEWITKTLEHETTTLAKEAETSEERIYILLTGNLIGQACEEAVQSQNNRLSTLIP 1363
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 25.8 bits (54), Expect = 6.7
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
Frame = -2
Query: 570 EQAMFYNAINPGQIKKLIL--------LDVGLSLQRLQ-MVPMNEYYKSFYDAHY 433
E+ FYN +N QIKKL L L+ + ++L+ + MN + FY +HY
Sbjct: 233 EEQEFYNNLNQFQIKKLSLERQYDCANLEFEHNSRKLEKLQKMNVFSDIFYISHY 287
>SPBC3B9.06c |apg3||autophagy associated protein Apg3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 275
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 613 QMLSNVFYNGRE*SLDNFTPIGKASDFPCPGMSYP 717
Q L++ F N RE + TP K SDF GM P
Sbjct: 3 QRLTSAFLNWRE----HITPASKTSDFENTGMISP 33
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = -2
Query: 450 FYDAHYVDYHKQISERKAYSKEEALKAVVKARGVNREQAEIILSRNLIEIG 298
FY+ +DY + E+K+YS + + + G ++++A IL L++ G
Sbjct: 102 FYENDIIDYDIEYIEQKSYSSKPSARVQKDDGGESKDEA--ILDFLLVQRG 150
>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 467
Score = 25.4 bits (53), Expect = 8.8
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = -2
Query: 636 IEYVAKHLGWTTFTCMAHSMGGEQAMFYNAINP---GQIKKLILLDVGLSLQRLQMVPMN 466
I+Y+ K G T T + S G QA +I+P +I LI L +S + L ++
Sbjct: 204 IDYILKTSGQTKLTYIGFSQGTAQAFASLSIHPLLNDKINSLIALAPAISPKGLHNRVVD 263
Query: 465 EYYKS 451
+ K+
Sbjct: 264 AFVKA 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,256,674
Number of Sequences: 5004
Number of extensions: 69520
Number of successful extensions: 193
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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