Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h11r
         (757 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0503 - 3596664-3596837,3597647-3598069,3598362-3598595,359...    34   0.14 
09_04_0609 - 18929600-18929646,18929753-18929924,18930304-189304...    30   2.3  
12_02_0680 + 21903520-21904093,21904474-21905162                       28   7.0  
06_01_0505 + 3639867-3640301,3640386-3640792,3641024-3641609,364...    28   7.0  
05_06_0254 - 26706830-26706943,26707063-26707193,26707330-267074...    28   7.0  
02_02_0628 + 12365109-12365150,12366315-12366411,12366489-123665...    28   7.0  
05_01_0100 + 670297-670525,671344-671559,671653-671758,671890-67...    28   9.2  

>06_01_0503 -
           3596664-3596837,3597647-3598069,3598362-3598595,
           3598720-3598993,3599390-3599523,3599572-3599634,
           3599759-3599846,3599919-3599989,3600898-3601010,
           3601836-3602004,3602580-3602671,3602819-3603295,
           3603736-3604090
          Length = 888

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = -2

Query: 222 YELFSRNSPPTLLLRATEERGGSADRIQAVKEILTKMEENCGNFLIVSVTGGHDVHLTNP 43
           Y  +S   P  LL R  +ERGG   ++  VK    ++ E    +++V +  G DV +   
Sbjct: 773 YRSWSSGMPDLLLWRFLDERGGGEAKLVEVKGPRDQLSEQQRAWILVLMDFGFDVEVCKL 832

Query: 42  ERCAKHISEF 13
           E  + H++ +
Sbjct: 833 EPRSPHVASW 842


>09_04_0609 - 18929600-18929646,18929753-18929924,18930304-18930498,
            18930691-18930801,18930885-18931097,18931643-18931720,
            18931894-18932001,18932175-18932316,18932413-18933761,
            18934492-18935121
          Length = 1014

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = -2

Query: 210  SRNSPPTLLLRATEERGGSADRIQAVKEILTKMEENCGNFLIV 82
            S+N   + ++    E GGSA+R   VKEIL + E N  N+L+V
Sbjct: 903  SQNKFASNVIERCFEHGGSAERELLVKEILKQTEGN--NYLLV 943


>12_02_0680 + 21903520-21904093,21904474-21905162
          Length = 420

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 103 LWEFSYRVSDGWT*RSSDKSGALRQT 26
           LW   +R+ +GWT  SS+  G ++ T
Sbjct: 137 LWSAVFRLPEGWTAASSELGGVIKAT 162


>06_01_0505 +
           3639867-3640301,3640386-3640792,3641024-3641609,
           3642185-3642244
          Length = 495

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
 Frame = -2

Query: 429 DYHKQISERKAYS---KEEALKAVVKARGVNREQAEIILSRNLIEIGDDRFV-LSWDNRL 262
           + +++I+ RKA S   + EA KAV+  R   +    + L R ++E   +R   L WD+ L
Sbjct: 86  EVNRKIASRKALSVILRREATKAVLDKRKPGKGTRRL-LPRTVLEALHERITALRWDSAL 144

Query: 261 KL 256
           K+
Sbjct: 145 KV 146


>05_06_0254 -
           26706830-26706943,26707063-26707193,26707330-26707417,
           26707970-26708087,26708184-26708332,26708787-26708840,
           26708963-26709031,26709146-26709246,26709391-26709473,
           26709846-26710041,26710171-26710279
          Length = 403

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 618 HLGWTTFTCMAHSMGGEQAMFYNAINPGQIKKLILLDV 505
           HLGW       HSMG   +    A+ P +I  L LL+V
Sbjct: 116 HLGWKKAHVFGHSMGAMISCKLAAMAPHRICSLALLNV 153


>02_02_0628 +
           12365109-12365150,12366315-12366411,12366489-12366554,
           12367884-12367963,12368051-12368125,12368232-12368381,
           12369816-12369881,12370141-12370206,12370653-12370763,
           12370917-12371003,12371087-12371193,12372141-12372255,
           12372472-12372537,12373521-12373615,12373700-12373880
          Length = 467

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
 Frame = -2

Query: 429 DYHKQIS-----ERKAYSKEEALKAVVKARGVNR--EQAEIILSRNLIEIGDDRFVLSWD 271
           D++K IS     E K   K +  K+ +  R  N     A+ + +++ + IGD +  LSW 
Sbjct: 337 DFNKAISSAKTEEEKTKIKSDQQKSTMTMRAYNNILAMAQPLRAKSPLFIGDKKITLSWM 396

Query: 270 NRLKLLAPS 244
            + K  AP+
Sbjct: 397 EQPKKPAPT 405


>05_01_0100 +
           670297-670525,671344-671559,671653-671758,671890-672229,
           672555-672839,672911-673033,673361-673435
          Length = 457

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 270 NRLKLLAPSNYPKEYYYELFSRNSPPTLLLRA-TEERGGSADRIQAVKEILTKME 109
           NRL  + PSNYP  +Y E+         LL+  + +R G    +  V  IL+++E
Sbjct: 107 NRLMSMCPSNYPMTFYPEITQPGPSQFYLLKLFSADRKG---LLHDVTHILSELE 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,033,542
Number of Sequences: 37544
Number of extensions: 448171
Number of successful extensions: 1165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)