Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h11r
         (757 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00052-2|AAK95881.1|  404|Caenorhabditis elegans Hypothetical pr...    31   0.88 
AC017117-2|AAF16617.1|  295|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z81116-14|CAB03310.2|  335|Caenorhabditis elegans Hypothetical p...    29   2.7  
Z81100-6|CAB03195.2|  335|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z81038-8|CAB02763.1|  328|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z68227-6|CAA92512.1|  410|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U50300-8|AAC48105.1|  646|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>U00052-2|AAK95881.1|  404|Caenorhabditis elegans Hypothetical
           protein K02F3.6 protein.
          Length = 404

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 12/223 (5%)
 Frame = -2

Query: 636 IEYVAKHLGWTTFTCMAHSMGGEQAMFYNAINPGQIKKLILLDVGL--SLQRLQMVPMNE 463
           I  V + LG+     +AH  GG  A  +    P  + KLI  ++    S ++      ++
Sbjct: 197 IRDVIEGLGYDKAIVVAHDWGGLVAWQFAEQYPEMVDKLICCNIPRPGSFRKRIYTSWSQ 256

Query: 462 YYKSFYDAHYVDYHKQISERKAYSKE-EALKAVVKARGVNREQAEIILSRNLIEIGDDRF 286
           + KS+Y   Y   +++I E    + + + L+   +A+ +  +      ++N      D  
Sbjct: 257 FRKSWYMFFY--QNEKIPEMLCSADDMKMLELCFRAKEIGIQN-----NKNF----TDED 305

Query: 285 VLSWDNRLKLLAPS-NYPKEYYYELFSRNSP--------PTLLLRATEERGGSADRIQAV 133
           + +W     +   S  YP  YY  +F+            PTL++  T +  G+ D I+A 
Sbjct: 306 LEAWKYSFSMNGASFKYPINYYRNIFNAKKQQADLVLEMPTLIIWGTAD--GALD-IEAA 362

Query: 132 KEILTKMEENCGNFLIVSVTGGHDVHLTNPERCAKHISEFLDK 4
            + L  +++  G    +     H V    PE   +HI +FL+K
Sbjct: 363 VDSLNTLKQ--GTMKKIE-GASHWVQQDEPEMVNEHIKKFLNK 402


>AC017117-2|AAF16617.1|  295|Caenorhabditis elegans Hypothetical
           protein F43C11.7 protein.
          Length = 295

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
 Frame = -2

Query: 534 QIKKLILLDVGLSLQRLQMVPMNEYYKSFYDA---HYVDYHKQISERKAYSKEEALKAVV 364
           Q+ K  + D   +L++  +   +E YK  YD    HY      ++ER+  SKE   K+V+
Sbjct: 155 QVNKKQVDDKIQALEKAALKKNDELYKEKYDEITRHYDRIRSSVAEREKTSKEVLKKSVL 214

Query: 363 KARGVNR-EQAEIILSRNLIE 304
            +   NR  Q    + R+L+E
Sbjct: 215 TSEEDNRMGQISNHVIRHLLE 235


>Z81116-14|CAB03310.2|  335|Caenorhabditis elegans Hypothetical
           protein K08G2.8 protein.
          Length = 335

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 242 TIQKNITMNCSRETLLPLYCCEPPKKEGVQRTEYKPSRKSL 120
           TI      N  RE +L ++CC  P +  +  T  K SRKS+
Sbjct: 294 TILMLYLQNPYREAVLSIFCCRKPVESKIFTTAGKFSRKSM 334


>Z81100-6|CAB03195.2|  335|Caenorhabditis elegans Hypothetical
           protein K08G2.8 protein.
          Length = 335

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 242 TIQKNITMNCSRETLLPLYCCEPPKKEGVQRTEYKPSRKSL 120
           TI      N  RE +L ++CC  P +  +  T  K SRKS+
Sbjct: 294 TILMLYLQNPYREAVLSIFCCRKPVESKIFTTAGKFSRKSM 334


>Z81038-8|CAB02763.1|  328|Caenorhabditis elegans Hypothetical
           protein C25A1.12 protein.
          Length = 328

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = -2

Query: 681 FPDWRKVI*ASFTPVIEYVAKHLGWTTFTCMAHSMGGEQAMFYNAINPGQIKKLILLD 508
           F D   +       V+E   K +G      + H+ GG  A  Y   NP ++  LIL+D
Sbjct: 159 FSDDNAIAELEMVEVMEDWRKAMGIEKMYIIGHAFGGYLASAYALENPSRVAHLILVD 216


>Z68227-6|CAA92512.1|  410|Caenorhabditis elegans Hypothetical
           protein F49C12.8 protein.
          Length = 410

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 480 MVPMNEYYKSFYDAHYVDYHKQIS 409
           ++P+ EY +S+YD HY  +  Q++
Sbjct: 273 LIPVREYLESYYDCHYDRFFIQLA 296


>U50300-8|AAC48105.1|  646|Caenorhabditis elegans Hypothetical
           protein R03H4.6 protein.
          Length = 646

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/64 (29%), Positives = 27/64 (42%)
 Frame = -2

Query: 468 NEYYKSFYDAHYVDYHKQISERKAYSKEEALKAVVKARGVNREQAEIILSRNLIEIGDDR 289
           N Y  +F +     +HK  SE + YS  E   A + A      QA  I  RN+ +   D 
Sbjct: 437 NSYVMTFSEPIRAQFHKNYSEYRYYSIGEG--AAIYADSPGSHQALDIFKRNVAKFKPDV 494

Query: 288 FVLS 277
             +S
Sbjct: 495 LFIS 498


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,990,498
Number of Sequences: 27780
Number of extensions: 383833
Number of successful extensions: 1115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)