Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h11r
         (757 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   1.0  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   3.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.4  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              21   9.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.4  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   9.4  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -3

Query: 749 LELLPDKYYYVGYDMPGHGK--SDAFPIGVKLSRLHSR 642
           LE  P  +YY+   +PG+G    D  PIG +    +S+
Sbjct: 406 LEGAPQNFYYIEEYLPGNGVIIPDDPPIGCECKTCNSK 443


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 616 FGLDDVYMYGT 584
           FG+DDV +YGT
Sbjct: 11  FGVDDVSLYGT 21


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 616 FGLDDVYMYGT 584
           FG+DDV +YGT
Sbjct: 11  FGVDDVSLYGT 21


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 616 FGLDDVYMYGT 584
           FG+DDV +YGT
Sbjct: 11  FGVDDVSLYGT 21


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 393 SKEEALKAVVKARGVNREQA 334
           S+ +AL  V+K   VN+EQ+
Sbjct: 763 SRNKALLPVIKPANVNKEQS 782


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 560 MACSPPIECAIHVNVVQPKCLAT 628
           + CSP + C    + V  + +AT
Sbjct: 14  LICSPSVHCGTRPSFVSDEMIAT 36


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 645 TPVIEYVAKHLGWTTFTCMAHSMGGEQA 562
           T +IE V +     T+TC+A +  G  A
Sbjct: 544 TLIIENVERMSDQATYTCVARNAQGYSA 571


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 423 HKQISERKAYSKEEALKAVVKARGVNREQAE 331
           HK I  R+    E+  K + + R   REQ E
Sbjct: 51  HKSIYHRQHSKNEQQRKEMEQMREREREQRE 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,162
Number of Sequences: 438
Number of extensions: 4779
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)