Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h11r
         (757 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14940.1 68417.m02294 copper amine oxidase, putative highly s...    31   0.83 
At5g12460.1 68418.m01464 fringe-related protein similarity to pr...    31   1.1  
At5g53050.2 68418.m06590 hydrolase, alpha/beta fold family prote...    30   1.9  
At5g53050.1 68418.m06591 hydrolase, alpha/beta fold family prote...    30   1.9  
At5g20250.2 68418.m02411 raffinose synthase family protein / see...    28   7.7  
At5g20250.1 68418.m02410 raffinose synthase family protein / see...    28   7.7  
At4g37650.1 68417.m05325 short-root transcription factor (SHR)         28   7.7  
At4g23490.1 68417.m03384 fringe-related protein  + weak similari...    28   7.7  
At3g58110.1 68416.m06480 expressed protein                             28   7.7  

>At4g14940.1 68417.m02294 copper amine oxidase, putative highly
           similar to copper amine oxidase [Arabidopsis thaliana]
           gi|2654118|gb|AAB87690
          Length = 650

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -1

Query: 565 SHVLQRYQSGPNKKTDSPRRGSFVATFTNG 476
           SHVLQ     P+KK   PRR SFV     G
Sbjct: 64  SHVLQWLSPNPSKKPPPPRRRSFVVVRAGG 93


>At5g12460.1 68418.m01464 fringe-related protein similarity to
           predicted proteins + similar to hypothetical protein
           GB:AAC23643 [Arabidopsis thaliana] + weak similarity to
           Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 415

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = -2

Query: 303 IGDDRFVLSWDNRLKLLAPSNYPKEYYYELFSRN--SPPTLLLRATEERGGSADRIQAVK 130
           IGDD  +   DN +K L   N+ K YY  + S N  S            GG A     V 
Sbjct: 104 IGDDDTLFFLDNLVKALDRYNHKKHYYVGMNSENVWSNAIFAFDMGYGGGGYALSYPTVV 163

Query: 129 EILTKMEENCGNFL 88
            +L+ MEE    +L
Sbjct: 164 TLLSNMEECIKRYL 177


>At5g53050.2 68418.m06590 hydrolase, alpha/beta fold family protein
           contains Pfam profile PF00561: hydrolase, alpha/beta
           fold family
          Length = 396

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 618 HLGWTTFTCMAHSMGGEQAMFYNAINPGQIKKLILLDV 505
           HLGW     + HSMG   A    A+ P ++  L LL+V
Sbjct: 116 HLGWKKAHIIGHSMGAMIACKLAAMAPERVLSLALLNV 153


>At5g53050.1 68418.m06591 hydrolase, alpha/beta fold family protein
           contains Pfam profile PF00561: hydrolase, alpha/beta
           fold family
          Length = 312

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 618 HLGWTTFTCMAHSMGGEQAMFYNAINPGQIKKLILLDV 505
           HLGW     + HSMG   A    A+ P ++  L LL+V
Sbjct: 116 HLGWKKAHIIGHSMGAMIACKLAAMAPERVLSLALLNV 153


>At5g20250.2 68418.m02411 raffinose synthase family protein / seed
           imbibition protein, putative (din10) similar to seed
           imbibition protein GB:AAA32975 GI:167100 from [Hordeum
           vulgare]; contains nonconsensus AT donor splice site at
           intron 1; contains Pfam profile PF05691: Raffinose
           synthase or seed imbibition protein Sip1; identical to
           cDNA seed imbibition protein (din10) partial cds
           GI:10834551
          Length = 749

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 37  ALRICQMNVMSTRH*HDKKIPTVLLHFGKDFLDGLY 144
           A+R  ++++ S R  H+KK+P ++ +FG    D  Y
Sbjct: 180 AIRTVKLHLNSFRQRHEKKLPGIVDYFGWCTWDAFY 215


>At5g20250.1 68418.m02410 raffinose synthase family protein / seed
           imbibition protein, putative (din10) similar to seed
           imbibition protein GB:AAA32975 GI:167100 from [Hordeum
           vulgare]; contains nonconsensus AT donor splice site at
           intron 1; contains Pfam profile PF05691: Raffinose
           synthase or seed imbibition protein Sip1; identical to
           cDNA seed imbibition protein (din10) partial cds
           GI:10834551
          Length = 844

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 37  ALRICQMNVMSTRH*HDKKIPTVLLHFGKDFLDGLY 144
           A+R  ++++ S R  H+KK+P ++ +FG    D  Y
Sbjct: 275 AIRTVKLHLNSFRQRHEKKLPGIVDYFGWCTWDAFY 310


>At4g37650.1 68417.m05325 short-root transcription factor (SHR) 
          Length = 531

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +3

Query: 168 LRWLAAI--KWEESFSRTIHSNILLDSL--RVLVTSICC 272
           LRW       WEESF RT +  ++L+    R +V  + C
Sbjct: 415 LRWFRVCFESWEESFPRTSNERLMLERAAGRAIVDLVAC 453


>At4g23490.1 68417.m03384 fringe-related protein  + weak similarity
           to Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 526

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = -2

Query: 303 IGDDRFVLSWDNRLKLLAPSNYPKEYYYELFSRNSPPTLLLRATEERGGSADRIQ-AVKE 127
           +GDD  V   DN +++L   ++ + YY    S +    +        GG    I   + +
Sbjct: 210 MGDDDTVFVIDNLIRVLRKYDHEQMYYIGSLSESHLQNIFFSYGMAYGGGGFAISYPLAK 269

Query: 126 ILTKMEENC 100
            L+KM++ C
Sbjct: 270 ALSKMQDRC 278


>At3g58110.1 68416.m06480 expressed protein
          Length = 784

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 257 NFNLLSQDRTNLSSPISIKFLDRIISACSLL 349
           +F +  ++R  L +  S++F+D I+S C LL
Sbjct: 210 DFVVTEEERELLENDESVRFIDEIVSTCVLL 240


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,966,958
Number of Sequences: 28952
Number of extensions: 363689
Number of successful extensions: 1143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)