Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h11f
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    26   3.7  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    26   3.7  
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    26   4.9  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    25   6.5  
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    25   8.6  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   8.6  
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...    25   8.6  
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    25   8.6  

>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
 Frame = +1

Query: 211 LLPDKYYYVGYDMPGHGKSDAFPIGVKLS-RLHFTPVIEYVAKHLGWTTFTCMAHSMGGE 387
           L PD    V +D PG G SD   IG   S  +    + E +A+      +  +AH +GG 
Sbjct: 304 LSPDTRVCV-WDRPGMGWSDN--IGSPSSVGIVMDLLTEALAQADVSGPYVLVAHGIGGV 360

Query: 388 QAMFYNAINPGQIKKLILLDVGLSLQRLQ 474
            +  + A +  ++K ++ +D G S+Q L+
Sbjct: 361 YSNVFAARHLSEVKGIVFVDAG-SVQTLK 388


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 244 HIQHNNIYPGAVPVMECRWPHC 179
           H+Q  +I+P  +   +CRW  C
Sbjct: 645 HLQEMHIFPQILETGKCRWSDC 666


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
 Frame = +1

Query: 385 EQAMFYNAINPGQIKKLIL--------LDVGLSLQRLQ-MVPMNEYYKSFYDAHY 522
           E+  FYN +N  QIKKL L        L+   + ++L+ +  MN +   FY +HY
Sbjct: 233 EEQEFYNNLNQFQIKKLSLERQYDCANLEFEHNSRKLEKLQKMNVFSDIFYISHY 287


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +1

Query: 319 IEYVAKHLGWTTFTCMAHSMGGEQAMFYNAINP---GQIKKLILLDVGLSLQRLQMVPMN 489
           I+Y+ K  G T  T +  S G  QA    +I+P    +I  LI L   +S + L    ++
Sbjct: 204 IDYILKTSGQTKLTYIGFSQGTAQAFASLSIHPLLNDKINSLIALAPAISPKGLHNRVVD 263

Query: 490 EYYKS 504
            + K+
Sbjct: 264 AFVKA 268


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 133 GNPRGDPILLIHGRQDSVATYIPL 204
           GN  G P +LIHG  D V     L
Sbjct: 463 GNGTGKPTVLIHGNVDEVGDVFAL 486


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 423  LARIDSVVE-HGLFAAHRMCHTCKRRPTQML 334
            L  I  V++ HG FAA ++    KR PT++L
Sbjct: 1497 LITIGPVIDLHGQFAAEKLEQIAKRFPTRVL 1527


>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 373 SMGGEQAMFYNAINPGQIKKLI 438
           S+GG +A  YNAI+  Q ++LI
Sbjct: 356 SVGGIRASLYNAISVEQTRRLI 377


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -2

Query: 164 ISSIGSPRGLPQDTSVNFPQGNG--IVHSLS 78
           ++   SP+ LP    V F  GNG  IVH  S
Sbjct: 333 LTKSSSPKPLPSSAIVKFDFGNGKSIVHEFS 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,614,927
Number of Sequences: 5004
Number of extensions: 57353
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)