Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10h11f
(612 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29053| Best HMM Match : No HMM Matches (HMM E-Value=.) 83 2e-16
SB_50673| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_16098| Best HMM Match : Abhydrolase_1 (HMM E-Value=4.5e-22) 49 3e-06
SB_33130| Best HMM Match : GSHPx (HMM E-Value=1.3e-15) 29 2.2
SB_44624| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.00027) 29 3.0
SB_33647| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_55323| Best HMM Match : DUF1605 (HMM E-Value=0.014) 28 6.9
SB_44193| Best HMM Match : 7tm_1 (HMM E-Value=4.4e-12) 27 9.1
SB_59676| Best HMM Match : VWA (HMM E-Value=8.8e-12) 27 9.1
SB_22824| Best HMM Match : Herpes_gI (HMM E-Value=1.8) 27 9.1
>SB_29053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 83.0 bits (196), Expect = 2e-16
Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Frame = +1
Query: 91 TIPLPWGKLTLVSWGNPRGDPILL-IHGRQDSVATYIPLLELLPDKYYYVGYDMPGHGKS 267
+ P+PWG + SWG RG+ L +HG D+V T+ L LL + V +D PGHG S
Sbjct: 11 SFPVPWGTIAAKSWG--RGEKKFLGLHGWLDNVETFSSLAPLLEKEVTLVAFDFPGHGMS 68
Query: 268 DAFPIGVKLSRLHFTPVIEYVAKHLGWTTFTCMAHSMGGEQAMFYNAINPGQIKKLILLD 447
P G + L + + V LGW F+ + HSMG A Y P ++ LIL++
Sbjct: 69 SRRPAGTAYTFLDWVLDVRKVVVQLGWVKFSMIGHSMGASVAALYAGTFPSEVIDLILIE 128
>SB_50673| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 49.2 bits (112), Expect = 3e-06
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Frame = +1
Query: 151 PILLIHGRQDSVATYIPLLELLPDKYYYVGYDMPGHGKSD--AFPIGVKLSRLHFTPVIE 324
P++L+HG V ++ ++L +K +D+PG G+S F + + F IE
Sbjct: 70 PLVLVHGFISGVCWWVQSFDVLSEKRTVYAFDLPGFGRSSRPEFSSTPEEAEDEFVQYIE 129
Query: 325 YVAKHLGWTTFTCMAHSMGGEQAMFYNAINPGQIKKLILLD 447
K +G F + HS+GG Y P ++ LIL D
Sbjct: 130 EWRKAVGLEKFILLGHSLGGYLVTAYALKYPDRVHHLILSD 170
>SB_16098| Best HMM Match : Abhydrolase_1 (HMM E-Value=4.5e-22)
Length = 863
Score = 49.2 bits (112), Expect = 3e-06
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Frame = +1
Query: 136 NPRGD--PILLIHGRQDSVATYIPLLELLPDKYYYVGYDMPGHGKSDA--FPIGVKLSRL 303
NP D P++++HG V + ++ L +D+ G G+S F ++
Sbjct: 570 NPNADKTPVVMVHGFGGGVGLWALNVDSLSKDRSVYAFDLLGFGRSSRPDFSTEADIAEQ 629
Query: 304 HFTPVIEYVAKHLGWTTFTCMAHSMGGEQAMFYNAINPGQIKKLILLD 447
F IE K LG F M HS+GG Y +P +K L+L+D
Sbjct: 630 EFVESIENWRKELGIEKFILMGHSLGGFLTSSYALQHPEHVKHLVLVD 677
>SB_33130| Best HMM Match : GSHPx (HMM E-Value=1.3e-15)
Length = 194
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 178 PDDRVLAVLDHPVDYPRIRAL 116
PDD ++ DHP YP++ AL
Sbjct: 20 PDDVIVVTHDHPAQYPQLNAL 40
>SB_44624| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.00027)
Length = 299
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 364 MAHSMGGEQAMFYNAINPGQIKKLILLDVGLS 459
+ HSMGG+ M + P + KLI++DV S
Sbjct: 140 VGHSMGGKVGMTFALTYPEMVDKLIVVDVSPS 171
>SB_33647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 342 GLDDVYMYGTFYGRRTSHVLQRYQSGPNKKTDSPRRG 452
GL DV+++ G R HV++ Y + +KT S RRG
Sbjct: 201 GLGDVFVFYPGEGYRNVHVIRGYDTAA-RKTRSLRRG 236
>SB_55323| Best HMM Match : DUF1605 (HMM E-Value=0.014)
Length = 125
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = +1
Query: 502 SFYDAHYVDYHKQISERKAYSKEEALKAVVKL 597
+FY++ Y+ YH+++ K Y ++ ++ +V L
Sbjct: 13 NFYESPYLVYHEKVKTSKVYIRDTSMVSVYAL 44
>SB_44193| Best HMM Match : 7tm_1 (HMM E-Value=4.4e-12)
Length = 863
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +3
Query: 186 GHLHSITGTAPG*ILLCWI*HARTWKVRCFP 278
GH + GT+ ++L W+ H + W + +P
Sbjct: 398 GHSGPLLGTSRNTLVLYWVRHGKLWSLTGYP 428
>SB_59676| Best HMM Match : VWA (HMM E-Value=8.8e-12)
Length = 678
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 133 GNPRGDPILLIHGRQDSVATYIPLLELLPDKYYYVG--YDM 249
GN G+ + R +A + ++ L P K+YY+G YD+
Sbjct: 543 GNDDGNNVARFFSRSGRIARRLRMVGLRPGKWYYLGLTYDV 583
>SB_22824| Best HMM Match : Herpes_gI (HMM E-Value=1.8)
Length = 1255
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +3
Query: 255 TWKVRCFPDWRKVI*ASFHARYRIRC*AFGLDDVYMYGTFYGRRTSHVLQRYQSGPNK 428
T + R P WR+ + A GLDDV+++ G R HV++ Y + ++
Sbjct: 288 TLRARRPPAWRQPVHAKSRTSDGKAGGTTGLDDVFVFYPGEGYRNVHVIRGYDTAADE 345
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,681,088
Number of Sequences: 59808
Number of extensions: 442576
Number of successful extensions: 1113
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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