Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10h10r
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0878 + 25606788-25606926,25607205-25607279,25607362-256074... 30 2.2
07_03_1255 + 25234072-25234220,25235052-25235288,25235713-252358... 29 3.9
02_04_0498 + 23480930-23481186,23483615-23483705,23483790-234839... 29 3.9
03_06_0090 + 31570588-31570710,31570962-31571080,31572215-315722... 29 5.2
11_01_0660 + 5382460-5382764,5383854-5384348,5384454-5384541,538... 28 6.9
02_04_0290 - 21627733-21628353,21628424-21628663,21628874-216292... 28 6.9
02_02_0398 - 9777596-9778146,9778229-9778400,9778522-9778639,977... 28 6.9
01_06_1507 - 37838645-37839311,37839393-37839499,37839588-378396... 28 6.9
>06_03_0878 +
25606788-25606926,25607205-25607279,25607362-25607426,
25607504-25607606,25607712-25607762,25608271-25608424,
25608781-25608925,25609039-25609144,25609267-25609415
Length = 328
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 502 FDFKQRGLQGIPDGTTIDTDGNL 434
F F R L G PD T+D DG+L
Sbjct: 39 FSFSSRPLGGSPDAVTVDEDGDL 61
>07_03_1255 +
25234072-25234220,25235052-25235288,25235713-25235845,
25235935-25236237
Length = 273
Score = 29.1 bits (62), Expect = 3.9
Identities = 22/89 (24%), Positives = 40/89 (44%)
Frame = -1
Query: 688 LYKLDSAKDGKLEKIIETVSLSNGLAWDLKEKAFYYTDSMQFSITKFDYDVDTGEISNPR 509
L K D + G+ +++ + +NG+A E ++M+F + GE +
Sbjct: 90 LLKYDP-RTGEASVVLDGLGFANGVALPPDEAFVVVCETMRFRCLRVWLK---GEKAGEA 145
Query: 508 NIFDFKQRGLQGIPDGTTIDTDGNLWVAV 422
IF L G PD + +DG+ W+A+
Sbjct: 146 EIF---VDNLPGNPDNIRLGSDGHFWIAL 171
>02_04_0498 +
23480930-23481186,23483615-23483705,23483790-23483935,
23484029-23484248,23484314-23484422,23484518-23484686,
23484801-23484975
Length = 388
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = -1
Query: 727 EDPPGNFERNKASLYK-LDSAKDGKLEKIIETVSLSNGLAWDLKEKAFYYTDSMQFSITK 551
E+ G E +A L K L + G+ EK +E + ++ G + +K ++Q +
Sbjct: 91 EENLGESEVREAHLAKSLYFMRVGEKEKALEQLKVTEGKTVAVGQKMDLVFYTLQIGLFH 150
Query: 550 FDYDVDTGEISNPRNIFD 497
D+D+ + I +N+F+
Sbjct: 151 MDFDLISKSIDKAKNLFE 168
>03_06_0090 +
31570588-31570710,31570962-31571080,31572215-31572284,
31572544-31573492,31574789-31575699
Length = 723
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 453 STPTATFGWPCLEAHACSRSILKTEKSYKN 364
STPTA FGWP +A A + + KN
Sbjct: 265 STPTALFGWPINDAAAAAAAAAGDRPRRKN 294
>11_01_0660 +
5382460-5382764,5383854-5384348,5384454-5384541,
5384629-5384691,5384965-5385125,5385214-5385289,
5385395-5385454,5385555-5385662,5385746-5385982,
5386192-5386307,5386756-5386813
Length = 588
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 321 PPKVAEVTCSAGIANFCRI-SPFLGLILSTHEPPNTATQRLPSVSMVVP 464
P A + +AG A+ S LG ++ EPP+ T R+P S V+P
Sbjct: 63 PAPSAASSSAAGSASASSAGSSSLGSSAASDEPPDLGTYRVPDASYVLP 111
>02_04_0290 -
21627733-21628353,21628424-21628663,21628874-21629214,
21630934-21631612,21631893-21631962,21632063-21632190
Length = 692
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Frame = +3
Query: 261 SCSLPTLQQAEVTNKISRFGPPKVAEVTCS-----AGIANFCRISPFLGLILSTHEPPNT 425
+CS P+ +Q V I PP+ V+C +A R +P L S PP++
Sbjct: 359 ACSAPSREQRMVVESIISITPPQRDSVSCGFLLRLLRLAIMLRAAPALPEYYSGRMPPSS 418
Query: 426 ATQRLPSVS 452
A S S
Sbjct: 419 AAAASASAS 427
>02_02_0398 -
9777596-9778146,9778229-9778400,9778522-9778639,
9778751-9779014,9779287-9779354,9779520-9780145,
9780257-9780412,9780528-9780625,9780741-9780832,
9780940-9781011
Length = 738
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +3
Query: 219 TPSPVTIKVAPEGGSCSLPTLQQAEVTNKISRFGPPKVAEVTCSAG 356
T S ++ +G SC TL +T+K+ PP + S G
Sbjct: 357 TASSTKFQMLVDGSSCDTQTLASINITSKVVLCSPPSLMPPRLSLG 402
>01_06_1507 -
37838645-37839311,37839393-37839499,37839588-37839663,
37839747-37839869,37840051-37840208,37840311-37840385,
37840466-37840506,37840594-37840670,37840755-37840883,
37840990-37841060,37841237-37841332,37841489-37841584,
37841681-37841953,37842871-37842957,37843101-37843178,
37843350-37843514,37843622-37843768,37843921-37843983,
37844082-37844201,37844352-37844543,37844672-37844748,
37845094-37845196,37845684-37845887
Length = 1074
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 189 NLTLTLGSPFTPSPVTIKVAPEGGSCSLPTLQQAEVTN 302
N+T LGSPF P + V P S +LP + +T+
Sbjct: 611 NITFELGSPFKPFDQLMGVFPAASSHALPVQYRQLMTD 648
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,353,104
Number of Sequences: 37544
Number of extensions: 473383
Number of successful extensions: 1192
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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