Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h10r
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_19601| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_25557| Best HMM Match : HECT (HMM E-Value=0)                        29   5.3  
SB_28350| Best HMM Match : BTB (HMM E-Value=1.1e-38)                   28   9.2  
SB_5433| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.2  
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)                      28   9.2  
SB_4602| Best HMM Match : dsrm (HMM E-Value=5.9e-14)                   28   9.2  

>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -1

Query: 385  NGEILQKLAIPAEQVTSATFGGPNLDILFVTSACCNVGKEQLPPSGATFMVTGL 224
            NG  L KL +P E ++      P +DIL +     N    + PP+  T +++ +
Sbjct: 1433 NGSSLNKLTLP-ESLSLQPKSQPQIDILTIAKRLSNTMALEKPPTFTTSLISSM 1485


>SB_19601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -1

Query: 562 SITKFDYDVDTGEISNPRNIFDFKQRGLQGIPDGTTIDTDGNLWVAVFGGSCVLK 398
           S  K  Y   +GE  N  N  D     L G  DG+ ++ + ++   V+  S VL+
Sbjct: 192 SHVKKAYSHQSGEDDNETNYADVNFDNLMGEADGSAVEQEDDIMTGVWAASGVLQ 246


>SB_25557| Best HMM Match : HECT (HMM E-Value=0)
          Length = 454

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 327 KVAEVTCSAGIANFCRISPFLGLILSTHEPPNTATQRLPSVSMVV 461
           ++A  T +  +  F  ++P L ++  T EPP +A   LPSV   V
Sbjct: 259 EIAGQTMATVMIGFRSLNPPLTIVRKTFEPPLSADNYLPSVMTCV 303


>SB_28350| Best HMM Match : BTB (HMM E-Value=1.1e-38)
          Length = 518

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = -1

Query: 463 GTTIDTDGNLWVAVFGGSCVLKINPKNGEILQKLAIPAEQVTSATFGG 320
           GT +  DG+L++ V GG  V + NP+  + + ++A  +++   A  GG
Sbjct: 310 GTAVVADGSLYMVVGGGLMVDRFNPRLNDWV-RVADGSKESEFAACGG 356


>SB_5433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +3

Query: 189 NLTLTLGSPFTPSPVTIKVAPEGGSCSLPTLQQ--AEVTNKISRFGPPKVAEVT 344
           N+  +LG    P+  T      GGS   PT+    A +  +++ FG P  A+ T
Sbjct: 420 NILASLGLSLPPASTTATSDALGGSSPAPTISPIWAAIQKELNAFGIPTTAKPT 473


>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
          Length = 661

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 195 TLTLGSPFTPSPVTIKVAPEGGSCS 269
           T T+GS   P  VT+KV+ EGG  +
Sbjct: 11  TQTIGSETLPQHVTLKVSQEGGGAA 35


>SB_4602| Best HMM Match : dsrm (HMM E-Value=5.9e-14)
          Length = 579

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 231 VTIKVAPEGGSCSLPTLQQAEVTNKISRFGPPKVAE 338
           ++++V  E   CS P L +++VT     FGP + A+
Sbjct: 516 MSLQVKFEDSPCSFPGLYESKVTVGTQEFGPKRSAQ 551


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,084,429
Number of Sequences: 59808
Number of extensions: 511924
Number of successful extensions: 1289
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)