Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10h10r
(748 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88175-5|AAB42278.2| 350|Caenorhabditis elegans Hypothetical pr... 38 0.008
Z79603-5|CAB01891.1| 435|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 2.6
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 2.6
U80450-5|AAB37830.1| 587|Caenorhabditis elegans Kinesin-like pr... 29 4.6
AB032080-1|BAA92263.2| 587|Caenorhabditis elegans kinesin like ... 29 4.6
Z70287-3|CAA94300.1| 1459|Caenorhabditis elegans Hypothetical pr... 28 6.1
AF099925-9|AAC69500.1| 150|Caenorhabditis elegans Hypothetical ... 28 8.1
>U88175-5|AAB42278.2| 350|Caenorhabditis elegans Hypothetical
protein F21F3.1 protein.
Length = 350
Score = 37.9 bits (84), Expect = 0.008
Identities = 26/87 (29%), Positives = 41/87 (47%)
Frame = -1
Query: 622 NGLAWDLKEKAFYYTDSMQFSITKFDYDVDTGEISNPRNIFDFKQRGLQGIPDGTTIDTD 443
+G WD EK+F ++ + + + IS + + D GL +P G TID +
Sbjct: 79 SGRVWD--EKSFNDHETFNKDLGVIN-NKTIAIISREKKVIDEFGAGLFYMPHGLTIDNN 135
Query: 442 GNLWVAVFGGSCVLKINPKNGEILQKL 362
G+ WV G V KI+ K +I+ L
Sbjct: 136 GDYWVTDVGSHQVHKIDAKTQKIVMSL 162
>Z79603-5|CAB01891.1| 435|Caenorhabditis elegans Hypothetical
protein M163.5 protein.
Length = 435
Score = 30.7 bits (66), Expect = 1.1
Identities = 29/118 (24%), Positives = 49/118 (41%)
Frame = -1
Query: 658 KLEKIIETVSLSNGLAWDLKEKAFYYTDSMQFSITKFDYDVDTGEISNPRNIFDFKQRGL 479
+LEK + + L G + L+ A + + + + K + V+ + N + + +
Sbjct: 115 RLEKSCKQLELIRGSMFSLQVDANFSNCNKKPTTAKLPFSVEYFIVENESDFIETFSNAM 174
Query: 478 QGIPDGTTIDTDGNLWVAVFGGSCVLKINPKNGEILQKLAIPAEQVTSATFGGPNLDI 305
PDG+ D DG ++A G + K KN I EQ TF P L+I
Sbjct: 175 YASPDGSLYDADG--FIAPLGPA---KKKRKNAPIAAN-----EQQNDVTFIKPPLNI 222
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
protein F29D11.1 protein.
Length = 4753
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = -1
Query: 709 FERNKASLYKLDSAKDGKLEKIIETVSLSNGLAWDLKEKAFYYTDSMQFSITKFDYDVDT 530
F + LY+L+ + K + + G+ +D ++ ++TD + S D D D
Sbjct: 398 FVARREGLYRLNPKNPDEEVKKLASGEFIYGIDFDYGDRKIFWTDRLAHSAFSADVD-DE 456
Query: 529 GEISNPRNI 503
GEIS + +
Sbjct: 457 GEISQIKKL 465
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
receptor-related protein protein.
Length = 4753
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = -1
Query: 709 FERNKASLYKLDSAKDGKLEKIIETVSLSNGLAWDLKEKAFYYTDSMQFSITKFDYDVDT 530
F + LY+L+ + K + + G+ +D ++ ++TD + S D D D
Sbjct: 398 FVARREGLYRLNPKNPDEEVKKLASGEFIYGIDFDYGDRKIFWTDRLAHSAFSADVD-DE 456
Query: 529 GEISNPRNI 503
GEIS + +
Sbjct: 457 GEISQIKKL 465
>U80450-5|AAB37830.1| 587|Caenorhabditis elegans Kinesin-like
protein protein 15 protein.
Length = 587
Score = 28.7 bits (61), Expect = 4.6
Identities = 27/98 (27%), Positives = 40/98 (40%)
Frame = +3
Query: 192 LTLTLGSPFTPSPVTIKVAPEGGSCSLPTLQQAEVTNKISRFGPPKVAEVTCSAGIANFC 371
+T+ + PS + P G SLP +++ + S P + T S I+
Sbjct: 48 ITIGAAARRPPSRLPTPTTPATGRASLP--ERSAMAKPASCSRPIPTMQSTASR-ISTLT 104
Query: 372 RISPFLGLILSTHEPPNTATQRLPSVSMVVPSGMPCRP 485
S F L T PP +TQR + S + PS RP
Sbjct: 105 AASTFRQL--RTGRPPPPSTQRSTATSSLKPSVTRARP 140
>AB032080-1|BAA92263.2| 587|Caenorhabditis elegans kinesin like
protein-15 protein.
Length = 587
Score = 28.7 bits (61), Expect = 4.6
Identities = 27/98 (27%), Positives = 40/98 (40%)
Frame = +3
Query: 192 LTLTLGSPFTPSPVTIKVAPEGGSCSLPTLQQAEVTNKISRFGPPKVAEVTCSAGIANFC 371
+T+ + PS + P G SLP +++ + S P + T S I+
Sbjct: 48 ITIGAAARRPPSRLPTPTTPATGRASLP--ERSAMAKPASCSRPIPTMQSTASR-ISTLT 104
Query: 372 RISPFLGLILSTHEPPNTATQRLPSVSMVVPSGMPCRP 485
S F L T PP +TQR + S + PS RP
Sbjct: 105 AASSFRQL--RTGRPPPPSTQRSTATSSLKPSVTRARP 140
>Z70287-3|CAA94300.1| 1459|Caenorhabditis elegans Hypothetical protein
R09E10.5 protein.
Length = 1459
Score = 28.3 bits (60), Expect = 6.1
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = -2
Query: 576 IPCSFR*RNLIMM*ILEKYPTPETYLTLNSAVYKAFRTVQPSTPTATFGWPCLEAHACSR 397
IP S R + + LE+YP + L + VQP+ T G LEA R
Sbjct: 894 IPQSVRTPEVRIQTRLERYPNRKVDFGLLGRYISQYELVQPTNATVITG-IALEATGTER 952
Query: 396 SILKTEKSYKN*QFPPN 346
I+ T K + ++ N
Sbjct: 953 VIVMTRKDTRRFRYRTN 969
>AF099925-9|AAC69500.1| 150|Caenorhabditis elegans Hypothetical
protein K01A2.9 protein.
Length = 150
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 107 VGIYYEILVFWKKLY*NIFVHFILICLI 24
V ++Y +LV W K+ + HF + CL+
Sbjct: 34 VAMFYFLLVQWSKVDIPVITHFQIFCLV 61
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,219,218
Number of Sequences: 27780
Number of extensions: 402318
Number of successful extensions: 1126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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