Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10h10r
(748 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 33 0.27
At3g51430.1 68416.m05633 strictosidine synthase, putative (YLS2)... 32 0.46
At3g12060.1 68416.m01500 expressed protein similar to hypothetic... 31 0.81
At3g31980.1 68416.m04050 hypothetical protein low similarity to ... 30 1.9
At3g51440.1 68416.m05634 strictosidine synthase family protein s... 29 2.5
At3g55540.1 68416.m06167 nuclear transport factor 2 (NTF2) famil... 29 4.3
At3g09080.1 68416.m01067 transducin family protein / WD-40 repea... 29 4.3
At1g79840.1 68414.m09327 homeobox-leucine zipper protein 10 (HB-... 29 4.3
At5g61090.1 68418.m07665 proline-rich family protein contains pr... 28 5.7
At5g59790.1 68418.m07495 expressed protein 28 5.7
At3g51420.1 68416.m05632 strictosidine synthase family protein s... 28 5.7
At5g46750.1 68418.m05759 human Rev interacting-like family prote... 28 7.6
At4g25720.1 68417.m03702 glutamine cyclotransferase family prote... 28 7.6
At4g17890.1 68417.m02666 human Rev interacting-like family prote... 28 7.6
At3g59530.2 68416.m06644 strictosidine synthase family protein s... 28 7.6
At3g59530.1 68416.m06643 strictosidine synthase family protein s... 28 7.6
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 27 10.0
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 27 10.0
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 27 10.0
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 32.7 bits (71), Expect = 0.27
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 1/141 (0%)
Frame = -1
Query: 721 PPGNFERNKASLYKLDSAKDGKLEKIIETVSLSNGLAWDLKEKAFYYTDSMQFSITKFDY 542
P G E NKA + LDS K K I+ V+L D++ YY + +++ D
Sbjct: 112 PDGADEPNKAKISLLDSKKTRK----IKVVALVGDDVSDME----YYKSRTKKNLSDSDS 163
Query: 541 DVDTGEISNPRNIFDFKQRGLQGIPDGTTIDTDGNLWVAVFGGSCVLKINP-KNGEILQK 365
D +T + ++F + G + +D + + V FG V+ + P + E L+
Sbjct: 164 DCETYGCEDAIHVFP-----IDGDIEADRVDKEFTIHVFGFGHQDVVFLEPIEAREALKG 218
Query: 364 LAIPAEQVTSATFGGPNLDIL 302
+ + A Q S G P DIL
Sbjct: 219 MGVQALQRCSPVSGAPR-DIL 238
>At3g51430.1 68416.m05633 strictosidine synthase, putative (YLS2)
similar to hemomucin [Drosophila
melanogaster][GI:1280434], strictosidine synthase
[Rauvolfia serpentina][SP|P15324]; contains
strictosidine synthase domain PF03088; identical to cDNA
YLS2 mRNA for strictosidine synthase-like protein
GI:13122281
Length = 371
Score = 31.9 bits (69), Expect = 0.46
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 487 RGLQGIPDGTTIDTDGNLWVAVFGGSCVL 401
+GL G PD D DG+ W+A+ G+ L
Sbjct: 255 QGLPGYPDNIRYDGDGHYWIAMVSGASTL 283
>At3g12060.1 68416.m01500 expressed protein similar to hypothetical
protein GB:CAB82953 GI:7340710 from [Arabidopsis
thaliana]
Length = 556
Score = 31.1 bits (67), Expect = 0.81
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 180 VVHNLTLTLGSPFTPSPVTIKVAPEGGSCSLPTLQQAEVTN 302
VV + LT+ F+PSP+T+ +AP S LP + + +N
Sbjct: 44 VVTFVALTVFLAFSPSPITVALAPSISSYVLPNITVSNSSN 84
>At3g31980.1 68416.m04050 hypothetical protein low similarity to
SP|P07271 DNA repair and recombination protein PIF1,
mitochondrial precursor {Saccharomyces cerevisiae}
Length = 1099
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 186 HNLTLTLGSPFTPSPVTIKVAPEGGSCSLPTLQQAEVTNKI 308
HNLTL +G TP + + P+GG C+ LQ ++ N I
Sbjct: 947 HNLTLKIG---TPVMLLRNIDPKGGLCNGTRLQVTQMGNHI 984
>At3g51440.1 68416.m05634 strictosidine synthase family protein
similar to hemomucin [Drosophila
melanogaster][GI:1280434], strictosidine synthase
[Rauvolfia serpentina][SP|P15324]; contains
strictosidine synthase domain PF03088
Length = 371
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 487 RGLQGIPDGTTIDTDGNLWVAVFGGSCVL 401
+GL G PD D DG+ W+A+ G L
Sbjct: 255 QGLPGYPDNIRYDGDGHYWIAMPSGVTTL 283
>At3g55540.1 68416.m06167 nuclear transport factor 2 (NTF2) family
protein contains similarity to Swiss-Prot:Q9P926 nuclear
transport factor 2 (NTF-2) [Candida albicans]
Length = 334
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 349 EQVTSATFGGPNLDILFVTSACCNVGKEQLPPSGATFMVTG 227
EQ+ S + G + D++ + CN E GA MVTG
Sbjct: 82 EQIVSCDYEGASFDVMSFAAQSCNTSSE----DGAFIMVTG 118
>At3g09080.1 68416.m01067 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats; similar to
JNK-binding protein JNKBP1 (GP:6069583) [Mus musculus]
Length = 1026
Score = 28.7 bits (61), Expect = 4.3
Identities = 32/142 (22%), Positives = 60/142 (42%)
Frame = -1
Query: 637 TVSLSNGLAWDLKEKAFYYTDSMQFSITKFDYDVDTGEISNPRNIFDFKQRGLQGIPDGT 458
T +LS+G +D+ A T + ++ + D ++ +I + + + FKQ G P
Sbjct: 521 TQTLSHGTIYDV---AVDPTSGLVVTVGQ-DKKINIFDIESGKLVRSFKQDRDHGDPVKV 576
Query: 457 TIDTDGNLWVAVFGGSCVLKINPKNGEILQKLAIPAEQVTSATFGGPNLDILFVTSACCN 278
+D N V + + ++ GE++ + E VT F I+ V S C
Sbjct: 577 ILDPSCNYLVCSYSNRTICFVDFVTGELVAQATGHGEAVTGVIFLPDCKHIISVASDGC- 635
Query: 277 VGKEQLPPSGATFMVTGLGVKG 212
+ +LP AT ++ + G
Sbjct: 636 IFVWKLPLRMATRIIRAVNENG 657
>At1g79840.1 68414.m09327 homeobox-leucine zipper protein 10 (HB-10)
/ HD-ZIP transcription factor 10 / homeobox protein
(GLABRA2) identical to homeobox protein (GLABRA2)
(homeobox-leucine zipper protein ATHB-10) (HD-ZIP
protein ATHB-10) GB:P46607 [Arabidopsis thaliana]
Length = 747
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 393 LILSTHEPPNTATQRLPSVSMVVPSGMPCRPRCLKS 500
L+L+ H+P N Q LPS ++P G+ RP + S
Sbjct: 657 LVLAGHDPSNI--QILPSGFSIIPDGVESRPLVITS 690
>At5g61090.1 68418.m07665 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains similarity to vegetative cell wall protein gp1
[Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420;
common family members: At4g18570, At3g25690, At4g04980
[Arabidopsis thaliana]
Length = 344
Score = 28.3 bits (60), Expect = 5.7
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 1/110 (0%)
Frame = +3
Query: 162 LCNVNHVVHNLTLTLGSPFTPSPVTIKVAPEGGSCSLPTLQQAEVTNKISRFGP-PKVAE 338
LC +N +V N + SP +IKV P G L + E +N ++R P P+ ++
Sbjct: 5 LCYLNQIVENFSSITMSPGQLPSDSIKVVP--GRSKL----RVESSNPVARGNPTPRASK 58
Query: 339 VTCSAGIANFCRISPFLGLILSTHEPPNTATQRLPSVSMVVPSGMPCRPR 488
V + S G+ +S +P AT ++P V PS P PR
Sbjct: 59 VKLLSPEEAMKLTSGGNGVAVSPVKPAR-ATSQVP--KRVPPSRTPEAPR 105
>At5g59790.1 68418.m07495 expressed protein
Length = 423
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -1
Query: 631 SLSNGLAW-DLKEKAFYYTDSMQFSITKFDYDVDTGEISNPRNIFD 497
S NG W DL E F + Q + K +D+ ISNPR++ +
Sbjct: 103 SYKNGFVWHDLSEDDFIFPVQGQEYVLKGSEVLDSCLISNPRSLLE 148
>At3g51420.1 68416.m05632 strictosidine synthase family protein
similar to hemomucin [Drosophila
melanogaster][GI:1280434], strictosidine synthase
[Rauvolfia serpentina][SP|P15324]; contains
strictosidine synthase domain PF03088
Length = 370
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 487 RGLQGIPDGTTIDTDGNLWVAV 422
+GL G PD D DG+ W+A+
Sbjct: 255 QGLPGYPDNIRYDGDGHYWIAL 276
>At5g46750.1 68418.m05759 human Rev interacting-like family protein
/ hRIP family protein contains Pfam profile PF01412:
Putative GTP-ase activating protein for Arf
Length = 402
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 305 NIQIWAPESRRSYLFGGN 358
N+ W+PE R+ +FGGN
Sbjct: 66 NLDSWSPEQLRTMMFGGN 83
>At4g25720.1 68417.m03702 glutamine cyclotransferase family protein
contains Pfam profile: PF05096 glutamine
cyclotransferase
Length = 320
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/83 (25%), Positives = 44/83 (53%)
Frame = -1
Query: 619 GLAWDLKEKAFYYTDSMQFSITKFDYDVDTGEISNPRNIFDFKQRGLQGIPDGTTIDTDG 440
GLA D KA + +D T + D T ++++ ++I + R ++ + + I+ +
Sbjct: 179 GLATD--GKALFGSDGTS---TLYRMDPQTMKVTD-KHIVRYNGREVRYLNELEYINNE- 231
Query: 439 NLWVAVFGGSCVLKINPKNGEIL 371
+W V+ C+ +I+PK+G +L
Sbjct: 232 -VWANVWQSDCIARISPKDGSLL 253
>At4g17890.1 68417.m02666 human Rev interacting-like family protein
/ hRIP family protein contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 413
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 305 NIQIWAPESRRSYLFGGN 358
N+ W+PE R+ +FGGN
Sbjct: 69 NLDSWSPEQLRTMMFGGN 86
>At3g59530.2 68416.m06644 strictosidine synthase family protein
similar to strictosidine synthase [Rauvolfia
serpentina][SP|P15324]
Length = 403
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/75 (21%), Positives = 34/75 (45%)
Frame = -1
Query: 646 IIETVSLSNGLAWDLKEKAFYYTDSMQFSITKFDYDVDTGEISNPRNIFDFKQRGLQGIP 467
++E ++ NG+ + +T++ + K Y ++ ++ + D L G P
Sbjct: 249 VLEGLAFPNGIQLSKDQSFLLFTETTNCRLVK--YWLEGPKMGEVEVVAD-----LPGFP 301
Query: 466 DGTTIDTDGNLWVAV 422
D I+ +G WVA+
Sbjct: 302 DNVRINEEGQFWVAI 316
>At3g59530.1 68416.m06643 strictosidine synthase family protein
similar to strictosidine synthase [Rauvolfia
serpentina][SP|P15324]
Length = 403
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/75 (21%), Positives = 34/75 (45%)
Frame = -1
Query: 646 IIETVSLSNGLAWDLKEKAFYYTDSMQFSITKFDYDVDTGEISNPRNIFDFKQRGLQGIP 467
++E ++ NG+ + +T++ + K Y ++ ++ + D L G P
Sbjct: 249 VLEGLAFPNGIQLSKDQSFLLFTETTNCRLVK--YWLEGPKMGEVEVVAD-----LPGFP 301
Query: 466 DGTTIDTDGNLWVAV 422
D I+ +G WVA+
Sbjct: 302 DNVRINEEGQFWVAI 316
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 27.5 bits (58), Expect = 10.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 508 NIFDFKQRGLQGIPDGTTIDTDGNLWVAVFGGSCVLKINPKNG 380
N+ + RG G+P + + D N + +G S L +P NG
Sbjct: 330 NVSNGNNRGNWGLPSSSAVSNDNNGFGRNYGTSSGLSSSPFNG 372
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 27.5 bits (58), Expect = 10.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 508 NIFDFKQRGLQGIPDGTTIDTDGNLWVAVFGGSCVLKINPKNG 380
N+ + RG G+P + + D N + +G S L +P NG
Sbjct: 330 NVSNGNNRGNWGLPSSSAVSNDNNGFGRNYGTSSGLSSSPFNG 372
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 27.5 bits (58), Expect = 10.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 508 NIFDFKQRGLQGIPDGTTIDTDGNLWVAVFGGSCVLKINPKNG 380
N+ + RG G+P + + D N + +G S L +P NG
Sbjct: 330 NVSNGNNRGNWGLPSSSAVSNDNNGFGRNYGTSSGLSSSPFNG 372
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,179,299
Number of Sequences: 28952
Number of extensions: 378143
Number of successful extensions: 969
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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